XLOC_017098 (mfsd4b)


Basic Information

Item Value
gene id XLOC_017098
gene name mfsd4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3339248 ~ 3345526 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034123
GAAGTTTTGAACCTCTGGCTACATTAGTGCTTGAATTTTAAAGTGCGTAAACACACAATGTTTCTGATGTTCTGATGTCCTGTCGATGTCAAGTGTGCGTCTATTTAAATAATTCTGAATGCGATGTGTTTATAGTCGAGAATAGGTCATTTGTGGGTCATTTTAGGTCGGTCTACAACCCATGAAAAACACTTTAATGCAGCGTTGACAGCTTTTTCGTCCACAACAGAGCAAGAGGCGTGCTGCAATGTCACCTGCTGAAGCAGCGCCAAGGAAAAAACACGTTCGCTTCGCCAGGATGGAAGGGGACGTTGACCATGACGACCAGGAAGAGAATACTCTTTTTGACAAGCAGAAAGATGTTAAGGAAGGACTAAAAAGCGTTTTAAAAGGGGGTAAAGGGATTCTCAGCCAGGGGTCTGGTCAGGTGGATGTAGTTAGACCCGGTCGAAGCAAAACTGGGACATGCTGGCGATGGCTGGTCAGTCTTGCGCTTTGCTCATCGTTTCTCGGGCTGGGAATGGCCATCTCTGTATTGGGCCCTACTTTTGAAGACCTGGCCATCAATGTCAACAAGAACATCAGTAACTTATCCTATATATTTGTGGGTCGTGCTTCTGGGTACATTGGAGGCTCCTTGTTAGGAGGGATCCTTTTTGACTTTGTGAATCCCCATCTTCTTTTGGGCTTCGCATTGCTAACCACAGCTTTTGGGATGTCTGGGACTCCCTTCTGTAAAAAGGCTTGGGTGCTCACTGTTTTGATGTCCAGTGTTGGAGTGTCAATGGGCGTTTTAGATACAGGCGGTAACGTTCTCATACTGAACACGTGGGGAGAGCAGGCTGGGCCTCACATGCAGGCTCTGCATTTTAGTTTTGCTGCTGGAGCCTTTGCCTCACCAATCATAGCCAAGCTGCTCTTCGGCCACCACAATTCCTCCACTAACACGTCTCTGATGTCTGGCCATGCCTCCAAGACTATTGACGCAGTCTTGCCGTTCTCCCATGCGAAGGGCACCTCTACGATCGACCTACCGTGGATGTGGGCCTACATTGTGATAGGCGCTTTTGTTTTGTTGGTGTCACTTCTCTTTTTCTCCTTGTACTTCTGCATTTCCACAAACTCAAATAGGACAAAGACGGCCTCGGGAAAGCAGCAGTTCTCCAAACACCACAACACACTCATAATCCTGCTGTCCATGTTCTTCTTTTTCTATGTTGGAAGCGAGGTGGCATATGGTTCCTTTATATTCACCTACGGAAAGGATTACGTTCATATGGAGGAGACCGAGGCAGCAGGACTGAATTCGCTGTTCTGGGGAGCATTCGCAGCCGGTCGGGGTCTGGCCATATTCTTTGCGGCCTGCCTACATCCGGGCACCCTGATTCTGCTGAGCTTAGTGGGCACCACGGTTTCCTCCCTCCTGCTTTGCCTTTTCAGCCAGAACTACCCTATGCTCTGGGCTTGCACTGCTCTGTACGGCATCTCCATGTCTACAACTTTTCCCAGTGGGATTTCATGGGTTGAGCAGTACACGACTGTGACCGGCCGCTCGGCTGCAATATTTGTGGTGGGCGCAGCTCTTGGAGAAATGGTTCTCCCAGCACTATTGGGCTTCTTACTGGGGCATGTGCAGAATCATCCCTTGCTGATGTACCTGACGCTATGCACAGCCACCTTCACTTCGATTCTGTTCCCCGTCCTATACAAACTAGCCTCACCAGGAGGGAATGTCACCTTACGGAAAAGTTCAGGGAAATGCACCATCAAGGATGCAGACGACAGCGAGTACCGCCAAGCCCTGCTGGAGAACATGGAGGAGCAGGAGGAAAACGAAAGCGAAGCCGACCTGTGCAACGATGCAGACTTTGAGGTCATCGAAATGGATGACGCCAGCCTGTTGAGCTCTCCGAAATCCTCACCGCCAGCTGATGTTGCAGCCAGCGTGCCTGACGTCCACCTGGTTGCGTCCCCACTGTCAGAACCTAACATGCTGTCCTTTTCCACAGACTCTCCTAGAAGCAAACTCTAAACAGAGTTCTCAACAGAGAGAGGAAAGACTAATAGATTGCACTACATCCAAGAGGTCTCGGCATTTAGCCAGGAACTGAAAATCCGCTGCTATGAACCTTCACATCAGCGAGCTTAATCCTTCACGCCAGATCCACCTGAAGCCTAATGCATTTTGTATCGAGCCAAAAGTTCACATGATTCAGTTAATTCACTGCTTTCTGACTCCCAGTTGCATGCATTTCAATGAGTTATCAGGATGTAATTGCAAATCAGCGTATTTGTCAGACAGTTGCTGTGAAACTGGAATATCGATCATCATCTGCTATTTATTTGACTCTAAGCTAACTAGCACAATACCAGTACACTAGTCTTGAGGGCTGTGAAAGGATTAAGTAGTGTGCGCTTGTGGTCAGATAGTACTAAGAACACATCGTAGATGAAATCATTGCTCAAGtcctttatatttttgtgttcataagaCAATTATATTAATTTTCCAATAAA

Function

symbol description
mfsd4b Predicted to enable glucose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport; sodium ion transport; and transmembrane transport. Predicted to be located in apical plasma membrane. Predicted to be integral component of membrane. Orthologous to human MFSD4B (major facilitator superfamily domain containing 4B).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0015293 symporter activity molecular_function
GO:0005355 glucose transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-26 Predicted to enable glucose transmembrane transporter activity. Predicted to act upstream of or within carbohydrate transport; sodium ion transport; and transmembrane transport. Predicted to be located in apical plasma membrane. Predicted to be integral component of membrane. Orthologous to human MFSD4B (major facilitator superfamily domain containing 4B).

Ensembl:

ensembl_id ENSDARG00000079571

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034123 True 2517 mRNA 0.48 4 3339248 3345526

Neighbor

gene id symbol gene type direction distance location
XLOC_017097 NA coding upstream 23611 3312662 ~ 3315637 (+)
XLOC_017096 ndufaf7 coding upstream 51159 3277620 ~ 3288089 (+)
XLOC_017095 CEP170B coding upstream 208367 3108597 ~ 3130881 (+)
XLOC_017094 amd1 coding upstream 360280 2950005 ~ 2978968 (+)
XLOC_017093 CABZ01027815.1 coding upstream 430583 2908551 ~ 2908665 (+)
XLOC_017099 LO018608.1 coding downstream 58121 3403647 ~ 3416581 (+)
XLOC_017100 C20H1orf198 coding downstream 570880 3916406 ~ 3927624 (+)
XLOC_017101 clec11a coding downstream 588990 3934516 ~ 3940286 (+)
XLOC_017102 arv1 coding downstream 652158 3997684 ~ 4011994 (+)
XLOC_017103 exoc8 coding downstream 706226 4051752 ~ 4054045 (+)
XLOC_017088 NA non-coding upstream 831153 2506900 ~ 2508095 (+)
XLOC_017087 NA non-coding upstream 857433 2480910 ~ 2481815 (+)
XLOC_017085 NA non-coding upstream 1054435 2281624 ~ 2284813 (+)
XLOC_017107 CABZ01067980.1 non-coding downstream 958931 4304457 ~ 4307735 (+)
XLOC_017108 CABZ01067979.1 non-coding downstream 963995 4309521 ~ 4318473 (+)
XLOC_017113 BX649499.2 non-coding downstream 1705663 5051189 ~ 5057952 (+)
XLOC_017116 dre-mir-7146 non-coding downstream 1729398 5074924 ~ 5075054 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000195_00375179_00378443 NA coding CI01000195 null 374199 ~ 378443 (-)