XLOC_017101 (clec11a)


Basic Information

Item Value
gene id XLOC_017101
gene name clec11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3934516 ~ 3940286 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034127
ATGTGGACTTGTGGTCATTTCATTCCACAGGCAAGAGAATTCAATGAGGGGATTGTCAGAGGACGAGGGGACACTCCGGACATCTTAGAACCTGAACCCACCACTGCTGTCTCGGACATGGAGAGCACATACAACTACATCTTGTCTAGACTAGCAGCGATGGATCAGGCCATCCACAGGCTTAACGTGGGACAATACACTTTAGACATTAAAGTGACACAGCTGCTGGAAAAAGTGTCGCGCCTAGACAATAGACTGGGTGATACTGAGGACGCCATTCAGCAAGTCTCGTCCTACTGCAAGGACAATCGCAAGGAGATTGGACGCCTAGAGGGCTGCCAGAAAGGCCGTAAAATAGGTTACAAATGCGTTCTGGCATACCGCGTGTACGAGACCTACGCAGATGCGTCCAAGAAATGTCAGGAGCGTGGAGGACGCATGGCCATGCCACGAGACCGCAAAGAGCAGGAAGCTCTGGCTGAATATGTGAAATCTGTATTCCATGGAAACTGGCCTGTGTGGCTTGGGATAAACGATGAGCGCTCTGAAGGCCTCTACCTGTTCGAGGACACGACACGCGTCACTTACTTCCAATGGAGGAAGCACTTCCTATCAAGCCAGCCAGATGGCGGGAAACGAGAGAACTGTGTAGCCATGTCCTCAGATGATGGAGACTGGTGGGACACTTACTGTGAAAGACGCATGTATTATCTGTGTGAGTTTGATGTCTGA

Function

symbol description
clec11a Predicted to enable growth factor activity. Predicted to be involved in ossification. Predicted to be active in extracellular space. Orthologous to human CLEC11A (C-type lectin domain containing 11A).

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0005615 extracellular space cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-130530-861 Predicted to enable growth factor activity. Predicted to be involved in ossification. Predicted to be active in extracellular space. Orthologous to human CLEC11A (C-type lectin domain containing 11A).

Ensembl:

ensembl_id ENSDARG00000079107

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034127 True 732 mRNA 0.51 3 3934516 3940286

Neighbor

gene id symbol gene type direction distance location
XLOC_017100 C20H1orf198 coding upstream 6892 3916406 ~ 3927624 (+)
XLOC_017099 LO018608.1 coding upstream 517935 3403647 ~ 3416581 (+)
XLOC_017098 mfsd4b coding upstream 588990 3339248 ~ 3345526 (+)
XLOC_017097 NA coding upstream 618879 3312662 ~ 3315637 (+)
XLOC_017096 ndufaf7 coding upstream 646427 3277620 ~ 3288089 (+)
XLOC_017102 arv1 coding downstream 57398 3997684 ~ 4011994 (+)
XLOC_017103 exoc8 coding downstream 111466 4051752 ~ 4054045 (+)
XLOC_017104 TRIM67 coding downstream 120553 4060839 ~ 4132099 (+)
XLOC_017105 gnpat coding downstream 217529 4157815 ~ 4186544 (+)
XLOC_017106 ipcef1 coding downstream 281692 4221978 ~ 4250762 (+)
XLOC_017093 CABZ01027815.1 non-coding upstream 1025851 2908551 ~ 2908665 (+)
XLOC_017088 NA non-coding upstream 1426421 2506900 ~ 2508095 (+)
XLOC_017087 NA non-coding upstream 1452701 2480910 ~ 2481815 (+)
XLOC_017107 CABZ01067980.1 non-coding downstream 364171 4304457 ~ 4307735 (+)
XLOC_017108 CABZ01067979.1 non-coding downstream 369235 4309521 ~ 4318473 (+)
XLOC_017113 BX649499.2 non-coding downstream 1110903 5051189 ~ 5057952 (+)
XLOC_017116 dre-mir-7146 non-coding downstream 1134638 5074924 ~ 5075054 (+)
XLOC_017119 CU571247.1 non-coding downstream 1483676 5423962 ~ 5424096 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_06958650_06963551 CLEC11A coding CI01000051 null 6958572 ~ 6963821 (-)