XLOC_017129 (tns3.2)


Basic Information

Item Value
gene id XLOC_017129
gene name tns3.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 6590220 ~ 6666641 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034167
AGAGGAGCGTTGGCTGAGTGGATCGGAATAATGCTTCCCAAGCCAGGATTTTCCCTTACACCCAGGAGAGGCACCTGAAAGGGGTTACCTGTGTGTGAaggtagagagaaagagagggagagcaGTACTGTAAGAGGGAAAAGGGAGGAGGGTAAACAGGGGAAAGAGATTGACTGAGGGAAagaaagaagaagaggaggaaagaaAAGGAGACTCAGGGGAGCTGTTATCACCTAATGGGAAAGAATGCAAGCTGCGTTTCTGTTTAAAACTGTGTGAAGAATGAGAAAGCATGCGGGACAAAATGGGAACAGTCGCCTGCAGGATAAACACGCCAAGCCACACGAAGGCACCCGCTCTTTAAGCAGTGACTCTGGACTCTCCAGCTCCTCCCAGTGGACCGGAGGACAAGCCTCTGGGCTCCTAATCAGCTACAGCCCTGAGGAGAACAACCAGCTCAACACAGTGACCCCTGGACTCAGAATGGAGGAGGAACAATCATCTCCAGGCACCTTGAGACGGGACCCTACAACCAGTCAATCCGTTCTTGATTATTCTGGACACTTAAATGGTGACTCTATGTTCACAGAGCGGGAGACAGACATTATAGATGACGATGAGGATGACATCACCTCCCCTAATGATGCCATTGCTGCTGTTTCAGACTCGCTGTCCTTTAAGGAAACGTCTGGTTTGTCTTCAGGTCAGAGTTCTGATTATCAAAATGAAGCTTCTCCTGCCAAATTTCGTGGTGACGTGAATACCTCGAACTCTGTCATAGACACTTCAGTTCCTGCAGGATATCAGACACGTATATGGGTGAAACAACAGCAGTCTACATCTTACGCACACACTCCAACAGACAGACTGGAAGTCAAGCAGGAGCTCCGAAGTGATGCAAGCAAGCCTTCAACGCCAGATAATTGTCTTCCAGAGGCGCCGTCAGAGACAGATAAGGATGATGTCATGGCTTTGGATCAATCAATCGAACAGCTCAATCAGCTGATCCTGGACCTCGACCCAGAATTTAAGCCAATCCCTACACAGCCACAGAGTCACATGACACGCTCAGCCTCCCTTTACACTAATGGAAAGACACAATCAATGGGGAAAGCCAAATCTCACCTATCAGGTTGGAGACAAAAACAGCTCAGCGATGTCTCCGAATACTCTGTGCTGCAGAATACGAGTGGGgatcaaacacagaacacccagaGATTCGATTTTAGCACGCCATCTCTGCGAGGCTTGTATCACACTGACGCCGTTGACTTTGGTGACCTCCCTCCAGAAGTTGACAGACCACTGTGGGTGGGTTTAAATCAAGCTCCGCCCACACCAGCATTTCCTGTCACACCCCCCACTCCATATGTGAAGAGCGGTAATGACTTCACCAATTCAAGACCTGGCTCTCAAACCAGTAGACACTACATGAGCTCTCCAGTATGGCAAGAGTCGAGAGGATTCACAGACAGCATGACACACACATCTATGTCATCTGACGGAGAGATCTTCCATTCTGATGTCACAGGAAGTCCCGCCTCCTGCCAGAGGATGTTCGGATCACTGCACTCGATCTCCACCCCCAGTCCATTGGTCAATGCGGACAGCCCCACTCCAGCTCATTCCTGGTTAGAGGGTGGATCCAGTACCCCGTTAAGTCACTACACACCTCAACCCTCCCCACCGCTCACCCTCTCAGCCCCGAACTCCCACAGTTCCCCTCGCAGAGCCCCTCGGAGCCTGTCCTCCGCTCTGGATATGGGAAGTCTGGAGAGCAGCCTGCTGGAGGCAGTGGAGGGCCTGGAGGCTCTGGGTCTGGATGTGGCTCAGCCTCCACTTCTGCCCCTGAAGAGACGCGGGACTGACGGATCAGAGAACATGTTGAGTTTCCCGCTCAGCAGGAGCACTGTCAGCACATCCTACGCCAGTCACAACACCTCACCCTCCAGATCCACACCGAGTCCAGATTTCATGGCCAGTAAACCTGAAAATGTGAAGTTTGTTCAGGATACTTCAAAGTTCTGGTACAAGCCGGATATTTCGAGAGAGCAAGCTATTTCCGTTCTGAAGGATAAAGAGCCTGGCTCCTTCATCATCAGGGACAGTCACTCATTCAGAGGAGCGTACGGATTGGCCATGAAGGTGGCCACGCCCCCTCCCACTGTTCTACAGACAAGCAGGAAAGTGGGCGATCTGTCCAATGAGCTCGTGAGGCATTTCCTGATCGAGTGCACACCGAAAGGAGTGCGGTTAAAAGGCTGTCCTAATGAACCCTATTTTGGAAGTCTGACAGCATTGGTGTGTCAGCATTCAATCACACCTTTGGCTTTACCCTGCAGACTCATCATCCCAAGCAGAGACCCTCTCGAGGAGTTCAACGAGTCTCCAACACAGACGTCCACAAACTCTGCTGCAGAGCTACTGAAGCAGGGAGCAGCATGTAACGTGTGGTTCCTGGGCAGTGTGGATCTGGAGTCTCTGACAGGAGTTCAGGGGGTTCAGAAGGCCACCACGGTCACCTTCAATAAGGATCCTCCACCAACATCCACAGTCGTCCACTTTAAAGTGTCTGCACAGGGAATCACCCTCACAGACAACCAGCGGAAATTGTTCTTTAGGAGACACTATGCAGTCTCTACAGTGATATTCTGTGCCCTGGACCCTCAAGACAGGAAATGGAAGCGAGACGGCTGCACTGCTGCAAAgaTCTTTGGTTTCATCGCGAGGAAAAGTGGAAGCAGCACAGAGAATGTGTGTCACCTGTTTGCCGAACACGACCCCGAACAGCCCGCCAGCGCCATCGTCAACTTTGTCTCCAAAGTTATGATTGGCTCTCAGAAGAACAAGTAAACCAATGATTTCGAAGAGCAAAACGTATTTAAAGTATTCTACATGCTACTACTTTGACATTGTTATGGATGAAGCTTCATTGATTCTCCTTGGAGTTTTTTGGGCAAGATACACAGGGATTGAGATCATGAACAGATTTTGTTGGtgggtctttttttatttaatctttttaacaAGACCCAGAACTTTATTTCACTTTTGACCGTCTGAAAAGGCGTTCAGTTTGAAATTTGAAATGTGGGTTACTGTTGCGTTAACAGGACTCATCCAGTCGGGGGCGCCACATTTCTTTGTGGCTCAATCTGGCACTGACATAAACAGCCCGCTCAAAGCAAAGTGAAGGGACTATGGAGGAATACAGCTCACTGTTATGTTATTTTACCCGCCACAAAGACTTCCTTTGCAGTATTTCAAGGTTCCTTGGTTTCCTTGGAAAGAATAAACTGAGGTTTAGCTACATTAATTTCTGCGTTTTGTCTGGGCACATACATCTACAAAACCAAAGAGCATTTCGCATATCAATTTACGATGTTTTTGATTATAAATATCAAG
>TCONS_00034168
CTCAATGACTTCATTCAGACCTGACGCAGACGACTAGAGAAGGGGACTCAGTCAGAGTTTGGATAGGACAGAGAGCCTGTGACGCTCGCGGTCAGCGTTTGTGCTgaaaagagaaagacagagagaatgTGAGGTGGAATAACGATAAGTGACAGAGTAACGTAAAGGATTCAAGAAAGGCAAACACAGGGAGTCAAAAGTCTTCTGTGAGTGAACTTCTTATGAGGGACACTTCAGCATGACTGCTTCTCTAGAGTCGAGAGGATTCACAGACAGCATGACACACACATCTATGTCATCTGACGGAGAGATCTTCCATTCTGATGTCACAGGAAGTCCCGCCTCCTGCCAGAGGATGTTCGGATCACTGCACTCGATCTCCACCCCCAGTCCATTGGTCAATGCGGACAGCCCCACTCCAGCTCATTCCTGGTTAGAGGGTGGATCCAGTACCCCGTTAAGTCACTACACACCTCAACCCTCCCCACCGCTCACCCTCTCAGCCCCGAACTCCCACAGTTCCCCTCGCAGAGCCCCTCGGAGCCTGTCCTCCGCTCTGGATATGGGAAGTCTGGAGAGCAGCCTGCTGGAGGCAGTGGAGGGCCTGGAGGCTCTGGGTCTGGATGTGGCTCAGCCTCCACTTCTGCCCCTGAAGAGACGCGGGACTGACGGATCAGAGAACATGTTGAGTTTCCCGCTCAGCAGGAGCACTGTCAGCACATCCTACGCCAGTCACAACACCTCACCCTCCAGATCCACACCGAGTCCAG
>TCONS_00034169
ttaaaagttatttttacatACAAAGTCATTTCCTTTGTGTTCGCAGTGGGCGATCTGTCCAATGAGCTCGTGAGGCATTTCCTGATCGAGTGCACACCGAAAGGAGTGCGGTTAAAAGGCTGTCCTAATGAACCCTATTTTGGAAGTCTGACAGCATTGGTGTGTCAGCATTCAATCACACCTTTGGCTTTACCCTGCAGACTCATCATCCCAAGCAGAGACCCTCTCGAGGAGTTCAACGAGTCTCCAACACAGACGTCCACAAACTCTGCTGCAGAGCTACTGAAGCAGGGAGCAGCATGTAACGTGTGGTTCCTGGGCAGTGTGGATCTGGAGTCTCTGACAGGAGTTCAGGGGGTTCAGAAGGCCACCACGGTCACCTTCAATAAGGATCCTCCACCAACATCCACAGTCGTCCACTTTAAAGTGTCTGCACAGGGAATCACCCTCACAGACAACCAGCGGAAATTGTTCTTTAGGAGACACTATGCAGTCTCTACAGTGATATTCTGTGCCCTGGACCCTCAAGACAGGAAATGGAAGCGAGACGGCTGCACTGCTGCAAAGTAA
>TCONS_00034170
CTGGAGTCTCTGACAGGAGTTCAGGGGGTTCAGAAGGCCACCACGGTCACCTTCAATAAGGATCCTCCACCAACATCCACAGTCGTCCACTTTAAAGTGTCTGCACAGGGAATCACCCTCACAGACAACCAGCGGAAATTGTTCTTTAGGAGACACTATGCAGTCTCTACAGTGATATTCTGTGCCCTGGACCCTCAAGACAGGAAATGGAAGCGAGACGGCTGCACTGCTGCAAAGTAAGCCTTCCTCCATCACCTTCTGAATAAACATGCACCCTTTGCacatatgtacatttatttatgattttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
tns3.2 Predicted to be located in cell junction. Orthologous to human TNS3 (tensin 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-95 Predicted to be located in cell junction. Orthologous to human TNS3 (tensin 3).

Ensembl:

ensembl_id ENSDARG00000031911

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034167 False 3405 mRNA 0.49 16 6590220 6666641
TCONS_00034168 False 770 mRNA 0.55 3 6630540 6652408
TCONS_00034169 False 570 mRNA 0.49 6 6659770 6665786
TCONS_00034170 True 350 mRNA 0.48 3 6663544 6665896

Neighbor

gene id symbol gene type direction distance location
XLOC_017128 tns3.1 coding upstream 13411 6543674 ~ 6576809 (+)
XLOC_017127 si:ch211-191a24.4 coding upstream 49287 6533260 ~ 6540933 (+)
XLOC_017126 mep1b coding upstream 73681 6493648 ~ 6516539 (+)
XLOC_017125 CABZ01086587.1 coding upstream 254809 6335296 ~ 6335411 (+)
XLOC_017124 NA coding upstream 375431 6212810 ~ 6214789 (+)
XLOC_017130 igfbp3 coding downstream 89606 6756247 ~ 6804237 (+)
XLOC_017131 CR788301.1 coding downstream 253107 6919748 ~ 6919864 (+)
XLOC_017132 ftr85 coding downstream 417513 7084154 ~ 7104637 (+)
XLOC_017133 si:dkeyp-51f12.2 coding downstream 513657 7180298 ~ 7192454 (+)
XLOC_017134 si:dkeyp-51f12.3 coding downstream 543331 7209972 ~ 7229267 (+)
XLOC_017119 CU571247.1 non-coding upstream 1166124 5423962 ~ 5424096 (+)
XLOC_017116 dre-mir-7146 non-coding upstream 1515166 5074924 ~ 5075054 (+)
XLOC_017113 BX649499.2 non-coding upstream 1532268 5051189 ~ 5057952 (+)
XLOC_017136 NA non-coding downstream 660850 7327491 ~ 7351711 (+)
XLOC_017137 FO834840.1 non-coding downstream 674437 7341078 ~ 7341194 (+)
XLOC_017139 NA non-coding downstream 867075 7533716 ~ 7540142 (+)
XLOC_017142 NA non-coding downstream 1235315 7901956 ~ 7902288 (+)

Expression


Co-expression Network