XLOC_017610 (hnrnpa0l)


Basic Information

Item Value
gene id XLOC_017610
gene name hnrnpa0l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45620076 ~ 45622385 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034941
GTTGTGCCCGTGGATTTGATTTGTACAGGGCTGCCGTTTTACTGGCCTTACGCTGCAGAAACCAGAGAAAATGGGCGACAGATTTATCCAACTGCATTCCAACAGTCACCACAAAAACCTGCTCGGCGCCATGTGGAAGCTTAGGACCAGGGGAAACCTGTGCGACATCACCATCCAGGTGGACTTTCAGGGAGAGCTGGAGGAGTTCGAAGCCCATCAGGTGGTCCTGGCCGCGTCCAGCGCTTACTTCAAAACCCACCTCTTAACAGAAGACCCAGTGAACAAGATGTTCCTCTGTGACTTTTCACCGCACTCCTTCTCCAAATTCCTAGAGTACGCGTATTCAGGGAAAATGGAGGTGGAGAAAAGTGGGATCGCTAACATATTACAAATGGCCAAACTCCTGAAATGCCAAGACCTGGTGGATGTCTGTGAGGTGGAAATTCCTAATGTTGCATCAGAGGAATGTGTAGAGAAAGATGCCGAAATCAAAACCAAGCATGTCAAAAAagcaattaaaagaaaaaagagagtAAAATCAGCCAAATACGTGAGTGAATCAGATGTGCTCGGCAGGAGAAGTGGAAGGTTAGCAGGTCGTAGAGTTAATGTAGAGTTTCCTCAGAAAAAATTAAAGAGGCAAACGGAAATCCTTGATGAACCTGACAATGCAGAAGGAGAAGAAGAGCAACGAATAGCAGAACATCCGGAAGCAGAATCATCAAAGAATGCATTGGATGACACTAGTAAAGACACTATTGATGACTCTGGGTCTGAATCTCCTGCCTATGTGCCTCAGGACGACCCTGACGAATCAGACTTTCTACCTGATGAGGAAATGGAGGCAGATGAAGC

Function

symbol description
hnrnpa0l Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Is expressed in liver.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-618 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Is expressed in liver.

Ensembl:

ensembl_id ENSDARG00000076380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034941 True 855 mRNA 0.46 2 45620076 45622385

Neighbor

gene id symbol gene type direction distance location
XLOC_017609 NA coding upstream 194257 45424391 ~ 45425819 (+)
XLOC_017608 CABZ01035143.1 coding upstream 684921 44935039 ~ 44935155 (+)
XLOC_017607 atad2b coding upstream 827519 44582318 ~ 44792557 (+)
XLOC_017606 NA coding upstream 1052820 44563932 ~ 44567256 (+)
XLOC_017605 CR545466.1 coding upstream 1082289 44516163 ~ 44537787 (+)
XLOC_017611 NA coding downstream 43773 45666158 ~ 45669350 (+)
XLOC_017612 chgb coding downstream 119181 45741566 ~ 45752016 (+)
XLOC_017613 NA coding downstream 214513 45836898 ~ 45841825 (+)
XLOC_017614 AL929237.4 coding downstream 230769 45853154 ~ 45857670 (+)
XLOC_017615 bmp2b coding downstream 270788 45893173 ~ 45899149 (+)
XLOC_017601 LO018405.1 non-coding upstream 1421261 44198698 ~ 44198815 (+)
XLOC_017616 NA non-coding downstream 271783 45894168 ~ 45896540 (+)
XLOC_017617 NA non-coding downstream 277763 45900148 ~ 45902157 (+)
XLOC_017618 AL929237.2 non-coding downstream 363076 45985461 ~ 45986783 (+)

Expression


Co-expression Network