XLOC_017612 (chgb)


Basic Information

Item Value
gene id XLOC_017612
gene name chgb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45741566 ~ 45752016 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034942
ACGAGCTTCTCTCTGCTCATCCAGCCCGAAAAAAATACGACAAAAGATCTGATCCGGATAACAAAGACAGGAGAAAACATCTGAGAGCATCATGAAGTTCGCGGCTTTTCTCTGCGTGTTTGTTTTCCTCGCTGCGGATGGAGGGTCCATACCAGTTGAGCAGGACAGCCGAAGAGAGGGGCTGCTTACCAAGTGTTTAGTTGAGATCCTTTCGAAGGAGCTGTATAAGACCGATGATACTCCGCTGCATCCAGAATGCAGAAACATCCTCTCACAAGGATCTGATCATTCCAAAGATGTGAAAAATACTAAAGAACCAACTCAAGAGGAGCTGAAAAAACCAAGAGAAGAGTCTAAAGTCAAAGATGAGGAACTCATTGACCATCTCCACAAGGCTGCTGACAAACGGGAGGAGTTGGGTGATGAACGGAGCCAAGAAGAGTTTCCAAGCTTCGTTAAAAGAACCAAAGACAGACGTGAGGAAATGGACGACGAACGAAGTCAGGAAGAATTCCCAAGCTTCATGAAAAGAGGAATCAAGGGTAAACGTGAGGGAATGGATGATGAACGAAGCCAGGAAGAGTTCCCGAGTTTCATGAAGAGAAGACTAAAGGAAAAGCGTGAGGGAATGGATGATGATCGAAGTCAGGAAGAGTTCCCGAGTTTCATGAAGAGAAGACTAAAGGAAAAGCGTGAGGGAATGGATGATGATCGAAGTCAGGAAGAGTTCCCGAGTTTCATGAAGAGAAGACTAAAAGAAAAGCGTGAGGGAATGGATGATGAACGAAGCCAAGAAGAGTTCCCAAGTTTCTATAAAAGATTCAACATGCATAAAAGAGAAGATTCTGATGACAGAAGCCAGGAGGAGTTTCCTCAGAAAAGATTTTTCTCTATGATTTACAAGCGTGACAATCCCGATGAGGAGCGTAGCCAGGAGGAATTTCCTTTCTACGAGTATAAAAGAAGTCATCTTCTAACCAGCCGGGAAAAACGCAACGACCTGGACTATGACAGAAGTCAAGAAGCCTTCCCAAGTTACATGATCAAAAGAACCTACGGGGACGGAGATGAAGAGGATGAGGGGATAGAGAAGAGGATCTGGAAGCCAACCCACAGATACCACCATAAGAAAAAGCACCACAAACGCAGCGAGAATGGGGACATCGAAGAACCAGATTACGATAGAAGTCAAGAAGACTTCCCGAGCTACGTCAACAAAAGAAACTACATGAATGGAGAAGAAATGGACGAAGAAAGTgaggagagagaaaagaggatCTGGAAGCCAACGCACAGATATCATCACAAGAAAAAGCACCACAAGCGCAGCGAGAATGGAGATATCGAAGATCCAGACTATGACAGAAGTCAAGAAGACTTCCCAAGCTACAACAAAAGGACCTACGGGGATGGAGATGAGATGGACGAAGAAAGTGAGGAGATAGAGAAGAGGATCTGGAAGCCAACACACAGATACCATCACAAGAAAAAGCACCACAAGCGCAGCGAGAATGGGGACATCGAAGAGCCAGACTATGACAGAAGCCAGGAAGACTTCCCAAGCAAAAGGAGTCAAGGTCACTACAAACAAACTGAGGATTTGGCGAACGCCCAACCTGAGGAGTCTGAAGAGCAAGATGAGGATATTGCAAAGCGATACTGGAAGCCCACACACAGATATCACCACAAAAAACATTATCGCAACAAGCGTGGCGACTCCATAGAGCTCGAGGATGAAAGTGAAGCCAGCCAGGAGGCCGAAGAGGAGCTCAACAAAGGACAACTGAGTTCAGCAGAAGCTGCGCTGAGATACCtaacaaacaaaaagaaggagTTAGAGGAGCGTCTACTCAACAAAGGTGACGTCTATGAGAAACGCTCTCCATGGATTGACAGAGGTTACTACCGaccagcctggtacaaaagaagCCAGAAGGCAGGTGAAAGTATGGATCAGCAGCCGTACCACACTCTAGAGGAGCTCGCCAAGACTCTCAGATACAAAAGAGGCCTGATTTCACAAGAGGAATCACCGGAGGAGGAAATCAGCGCCCCGCAACAGGAGTTAAAAGAACTTGAGGAGCTGGCCTCTGAGGATCAACAGATGACAGAAACAACTTAACCATTCAGAAAACCAGCCGAGATGTCATCTCTCTGTGTTGCCTGTGTGTGATCCGCTTTAAATGAATGCATTATTATATGTCGTATCTGATTACAATCGCTTTAGGCATTTGTTATTCCTGCAAGTCaagtttaatgtttaatgtgaaaGCCAGAGAAACAAGAATAAGTCGGTATGCTTTAGTTTAGCTCACCATTcacggtattaacaaaccattaagtaACTCTACTAGCTTACATAACTACTAATTAGCTCCATATTAATAGTAAGTAAGTTTAAATTAAAAGTGGGGTTTAGgttatgggtagggttagggatgcagaataagatcatactttataatgaacagttaatatcttaataataggcaggtaataagctagtagttaatagcatgaagtGAGACCTAAAGTGCTACCTAACAGTTTATAAAAAGCAAAACTAGCTACATCATGTGAATATTCTCtctttattaacatctaaaaataaccAAGAAAACAAAATGCCCATGTACTTTTGACCGTGTTTAAGAGCATGCTACTGTACAGCAGTGAATGATGtagtatgtgtttaaaaaaaatggttgtcAATTATAATACACATCCCTGCATTGCTTAttgtttgcatttaataaaaGGTGTAATTATGGGACCAAA

Function

symbol description
chgb Predicted to be active in extracellular space and secretory granule. Orthologous to human CHGB (chromogranin B).

GO:

id name namespace
GO:0030141 secretory granule cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-070705-268 Predicted to be active in extracellular space and secretory granule. Orthologous to human CHGB (chromogranin B).

Ensembl:

ensembl_id ENSDARG00000076500

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034942 True 2778 mRNA 0.43 5 45741566 45752016

Neighbor

gene id symbol gene type direction distance location
XLOC_017611 NA coding upstream 72216 45666158 ~ 45669350 (+)
XLOC_017610 hnrnpa0l coding upstream 119181 45620076 ~ 45622385 (+)
XLOC_017609 NA coding upstream 315747 45424391 ~ 45425819 (+)
XLOC_017608 CABZ01035143.1 coding upstream 806411 44935039 ~ 44935155 (+)
XLOC_017607 atad2b coding upstream 949009 44582318 ~ 44792557 (+)
XLOC_017613 NA coding downstream 84882 45836898 ~ 45841825 (+)
XLOC_017614 AL929237.4 coding downstream 101138 45853154 ~ 45857670 (+)
XLOC_017615 bmp2b coding downstream 141157 45893173 ~ 45899149 (+)
XLOC_017616 NA coding downstream 142152 45894168 ~ 45896540 (+)
XLOC_017617 NA coding downstream 148132 45900148 ~ 45902157 (+)
XLOC_017606 NA non-coding upstream 1174310 44563932 ~ 44567256 (+)
XLOC_017605 CR545466.1 non-coding upstream 1203779 44516163 ~ 44537787 (+)
XLOC_017618 AL929237.2 non-coding downstream 233445 45985461 ~ 45986783 (+)
XLOC_017619 NA non-coding downstream 235901 45987917 ~ 45996432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_05041887_05044363 NA coding CI01000029 null 5040997 ~ 5045063 (+)