XLOC_017616


Basic Information

Item Value
gene id XLOC_017616
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45894168 ~ 45896540 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036682
ACTTTTCCATGCGTATAAGTGGTTGAAGCTCTGGGCTTGAAGTCAAACGTGTGGAGTTTATGCACTAGTTATTTTCCAAGAATCCGCAGATTGCAGTAACAAGCCCTACGAGGAAGTCCAGGATGGTAGTTTTGCTGTTCTCCATCAAGTTCTGTCATTGATGTTTTTGAGCCCTCAATGGGAGGGCTTGTTTCTGCACCAACTTAcagatattgtgtgtgtgtgtgtgtgtgtttagctttGCTCAACTCTTTATCACATGCCCGAGTAACTCTAGCCTAACTTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036682 True 286 lncRNA 0.44 2 45894168 45896540

Neighbor

gene id symbol gene type direction distance location
XLOC_017614 AL929237.4 coding upstream 36498 45853154 ~ 45857670 (+)
XLOC_017613 NA coding upstream 52343 45836898 ~ 45841825 (+)
XLOC_017612 chgb coding upstream 142152 45741566 ~ 45752016 (+)
XLOC_017611 NA coding upstream 224818 45666158 ~ 45669350 (+)
XLOC_017610 hnrnpa0l coding upstream 271783 45620076 ~ 45622385 (+)
XLOC_017617 NA coding downstream 3608 45900148 ~ 45902157 (+)
XLOC_017618 AL929237.2 coding downstream 88921 45985461 ~ 45986783 (+)
XLOC_017619 NA coding downstream 91377 45987917 ~ 45996432 (+)
XLOC_017620 si:dkey-7c18.24 coding downstream 143051 46039591 ~ 46043405 (+)
XLOC_017621 taar11 coding downstream 235272 46131812 ~ 46132911 (+)
XLOC_017609 NA non-coding upstream 468349 45424391 ~ 45425819 (+)
XLOC_017608 CABZ01035143.1 non-coding upstream 959013 44935039 ~ 44935155 (+)
XLOC_017606 NA non-coding upstream 1326912 44563932 ~ 44567256 (+)
XLOC_017637 BX957286.1 non-coding downstream 381366 46277906 ~ 46279478 (+)
XLOC_017642 NA non-coding downstream 455373 46351913 ~ 46357028 (+)

Expression


Co-expression Network