XLOC_017628 (stx7l)


Basic Information

Item Value
gene id XLOC_017628
gene name stx7l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46213553 ~ 46232859 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034957
CACGTGACCCGCGCGTCAAAGAAATCAGCTGAGGGCTCGGAGTTTCACTCAGGAAATCCAGGCTTCCATCATGTATGGATCAAGAGAAGTCGATGCCAATGGGCTGGCACAGACTATTAGTTCAAACATCCAGAGGATAACGCTTCTAACTAATGAAATCCAGCAGTTGATGAGACATCTTGGAACGGCACAAGACACAAGTGACCTGCGACAGACATTGCAGGAGAAGCAGCAGAGTGTCAATCAACTTGCTAAAGTGACAGATAAATGCATGAAAGATTTCAGCTCTTTACCTGCGACCACAGAACAGAGGCAAAGAAAGATCCAGCGAGAACGTCTCATCACTGAATTCTCCAACGTACTGGCCGTCTTCCAGAAAGCTCAGCGAGAGGTAGCAAAAAAAGAGAAGGAGTTTGTGGCTCGTGTTCGCGCAAGCTCCAGAGTTTCAGGTGGAGATATAGATGATGTGTTTGGAAGAGCTGCTCCAGCATTCCAAAGTGAGTTCAGTGCTCAAGCTCAGAGCTATGAGGAGAACATCACAGAAGAAGATCTGCGGCTCATTCAGGAAAGAGAATCTTCGATCAGACAGCTGGAGTCGGACATCACAGACATTAATGAAATCTTCAGAGATCTGGGCATGATGGTGCATGAACAGGGAGACATGATTGACAGTATAGAGGCCAACGTATCAAACGCAGAAATCAGTGTGCAGTCAGCCACAGAACAGCTGCAAAGAGCAGCAGGTCACCAGACGTCTTTCCGCAAGAAGATTTTCATCCTGGTGGCTGTTCTGGCTGTGGCGGCTCTCATTATTGGTTTGATTATCTATGCTTCTGTCAGCAAATGAGTCTGTATCACATCTCTCAGATTTTGCTCTGCCATATTTGTAATGAGTTGCTTTCTAACTGCAGTTTAGTGCCATTCACACCAAGAATGATCACTACAATGTCAATGATAAAGAAATAGCTCGAAAAGTCATcacaaatataaaacaacacaTCAAATATAATGACAACAGCACTGAGAACTACAATTGTTGGAATCGGTTTCAGaattgacagccaatcagaatctatgctttttttaaagtgcctctattaatattattaataatataattatactaCCTCCCATGCAATGTTTAGGAATTCACCTCTGCCATATGCATCTGCATGCAtcatatctgcagattctgtacTTAATTGTTTATGATGAGAGAATTCACTAAATATGTGACTTAACTCGCATATACAATTGAAAACTATTAGCCctgctgtaaaatgttttattctctTTCAggtatttcccaagtgatgtttaatagagcaaggacatttttacattatttcctataatatgttcTTATTATGACtggaataaaagtagtttaaggtcaatattattagcccctatttaCCGATTGgatgcagaacaaaccacttttaatttaattaaccaagttaagcctttaaattgcacattaagctgaatactagtaccttCCTTCATCCATTTTACATGATGTCTGTAAGTCAAATGTCACTTTGGAAATAACTGAAAAAATTCGCAGGGTTAAGATTTTTGACTTCATCTGGACATACATGAAACAACTGCATACATCTATACTGTACTACTTAAACCACTAGCCATTACTTTGGAAATGCTTTCATACAATAATTGCAACTGCAAACTAAtacatctacactacctgacaaaagtcttgtcgcctttccaagttttaggaacaacaaataataacttgacttttagtttggtatcagaagcggcttatataaaaggtaaaggcctctagattacgcctatttgaccaaaataaaagatgatcatgccttgattttgtattatttaattagtacagtaaggtctgactctgcttagacaaaagttacttaacagaagtaatgtccagtacagaatataaggtcatgctgcagtggaaacagaatgaatattgtgtctgactcccatgagcttggaggactgcatccatgcatctctgcaatgactccaatCACGTATTAATGaagtctggaatggcaaagaaagcgttcttgcaggactcccagagttcatcaagatactttgaattcatctttaatgcctcctccatcttaccccaaacatgctcaataatgttcatgtctggtgagtgggctggccaatcctggagcacccttaccttctttgctttctggaactttgaggtggaggctgaagtatgagaatgagcgctatcctgctaaagaaatTGCCcgctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgatacctcaggctgttgatgttgccgtccactctgcagatctctctcatgcccccatactgaatgtaaccccaaaccatgattattccttca
>TCONS_00034958
ATGTATGGATCAAGAGAAGTCGATGCCAATGGGCTGGCACAGACTATTAGTTCAAACATCCAGAGGATAACGCTTCTAACTAATGAAATCCAGCAGTTGATGAGACATCTTGGAACGGCACAAGACACAAGTGACCTGCGACAGACATTGCAGGAGAAGCAGCAGAGTGTCAATCAACTTGCTAAAGTGACAGATAAATGCATGAAAGATTTCAGCTCTTTACCTGCGACCACAGAACAGAGGCAAAGAAAGATCCAGCGAGAACGTCTCATCACTGAATTCTCCAACGTACTGGCCGTCTTCCAGAAAGCTCAGCGAGAGGTAGCAAAAAAAGAGAAGGAGTTTGTGGCTCGTGTTCGCGCAAGCTCCAGAGTTTCAGGTGGAGATATAGATGATGTGTTTGGAAGAGCTGCTCCAGCATTCCAAAGTGAGTTCAGTGCTCAAGCTCAGAGCTATGAGGAGAACATCACAGAAGAAGATCTGCGGCTCATTCAGGAAAGAGAATCTTCGATCAGACAGCTGGAGTCGGACATCACAGACATTAATGAAATCTTCAGAGATCTGGGCATGATGGTGCATGAACAGGGAGACATGATTGACAGTATAGAGGCCAACGTATCAAACGCAGAAATCAGTGTGCAGTCAGCCACAGAACAGCTGCAAAGAGCAGCAGGTCACCAGACGTCTTTCCGCAAGAAGATTTTCATCCTGGTGGCTGTTCTGGCTGTGGCGGCTCTCATTATTGGTTTGATTATCTATGCTTCTGTCAGCAAATGA

Function

symbol description
stx7l Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in synaptic vesicle. Predicted to be integral component of membrane. Orthologous to human STX7 (syntaxin 7).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-35 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in synaptic vesicle. Predicted to be integral component of membrane. Orthologous to human STX7 (syntaxin 7).

Ensembl:

ensembl_id ENSDARG00000069208

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034957 False 2408 mRNA 0.40 10 46213553 46232859
TCONS_00034958 True 777 mRNA 0.46 9 46216431 46231298

Neighbor

gene id symbol gene type direction distance location
XLOC_017627 taar15 coding upstream 5569 46206998 ~ 46207984 (+)
XLOC_017626 taar13c coding upstream 10338 46202188 ~ 46203215 (+)
XLOC_017625 taar13d coding upstream 20898 46191630 ~ 46192655 (+)
XLOC_017624 taar13b coding upstream 29023 46183505 ~ 46184530 (+)
XLOC_017623 taar13a coding upstream 35961 46176565 ~ 46177592 (+)
XLOC_017629 taar14a coding downstream 4141 46237000 ~ 46237963 (+)
XLOC_017630 si:dkey-246e3.4 coding downstream 7816 46240675 ~ 46241809 (+)
XLOC_017631 taar14l coding downstream 12591 46245450 ~ 46246407 (+)
XLOC_017632 taar14h coding downstream 18085 46250944 ~ 46252080 (+)
XLOC_017633 taar14i coding downstream 22198 46255057 ~ 46256016 (+)
XLOC_017619 NA non-coding upstream 217121 45987917 ~ 45996432 (+)
XLOC_017618 AL929237.2 non-coding upstream 226770 45985461 ~ 45986783 (+)
XLOC_017617 NA non-coding upstream 311396 45900148 ~ 45902157 (+)
XLOC_017616 NA non-coding upstream 317013 45894168 ~ 45896540 (+)
XLOC_017613 NA non-coding upstream 371728 45836898 ~ 45841825 (+)
XLOC_017637 BX957286.1 non-coding downstream 45047 46277906 ~ 46279478 (+)
XLOC_017642 NA non-coding downstream 119054 46351913 ~ 46357028 (+)
XLOC_017643 NA non-coding downstream 129592 46362451 ~ 46367708 (+)
XLOC_017644 NA non-coding downstream 135587 46368446 ~ 46423475 (+)
XLOC_017646 NA non-coding downstream 209687 46442546 ~ 46523077 (+)

Expression


Co-expression Network