XLOC_017630 (si:dkey-246e3.4)


Basic Information

Item Value
gene id XLOC_017630
gene name si:dkey-246e3.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 46240675 ~ 46241809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034960
ATGTGCGAGGACTACTCGTGTCCAGAGAGATCTGTTTCTTTATCTGTCTATGTGATTCTGTATGTGGCCGCAGCAGCTGTGGCTCTTCTGACCGTGTGTGGAAACCTGCTGGTCATCATCTCTGTTAGTCACTTCAAGCAGCTCCACACACCTGCCAACATCCTCATCCTCTCTTTGGCTGCGTCTGATCTGCTGGTGGGAGTTTTTGTGATGCCGTTTCACTTATCTTGGGTCATTGAGTCATGTTGGATTTCTGGACCAGCGATGTGCTTGATTTTCAGCTTTGTGACTTTTCAGGCCACATGCGTTTCTGTTCACACAGTGGCTTTAATAGCTGTCGATCGCTTTTTGGCTTtaggttttccttttttttactcAGAGAAAATCTCACCCACTGTGATCTGCATTACAACTTTGTTTAACTGGCTGTTTTCGTTTCTCTATAATTTCACTCTTCTTTATATTAATGGAAACTTCACTAATGTCATTTGTCAAGGTAAATGTCTTTACGTCGTTGATATGGTTTCATCCCTTATTGATCTCCTGATTGTGTTTATAATGCCATGTACACTCATTATATTACTATACATTCGTATTTTTGCCATTGCTAAGAAACATGCGACTGCTATAAGAGCCCTTCAGGTTCACAACAGCACAGAATCCTCTAAGAACAAAATCAGCGACAAATCAGAGAGAAAAGCTGCGATGCTGCTGGGGATTCTGGTCTTTGTGTTTCTCCTCTGTTTGCTGCCGTATTATATTACTTCATTAGTGATTTCATACAGTACTGCTAACTTATTTCACATCAGAGATGTTGCTGTAATATTTTTCTTCCTGAACTCCACCATTAACCCCATTATTTATGCCATATTCTATCCTTGGTTTcagaaaagtttaaaaataattttcacatttaaattgTTTACTAAAGACTCCTCTCTGATGAATGTGCAGTAAGTTATTGAATAAATCAAACAGGCATGTTTCACAAATTCACACagaacactttttttctgctttttagtTTTCAGTaattgagcaattccagcgttatggatgtgacaattGCAGTAAAACCTTAAAAtgtaaattcacagagaaagtatgttAACGTTATACTGACTGCTAcccacag

Function

symbol description
si:dkey-246e3.4 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130531-58 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000086390

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034960 True 1135 mRNA 0.39 1 46240675 46241809

Neighbor

gene id symbol gene type direction distance location
XLOC_017629 taar14a coding upstream 2712 46237000 ~ 46237963 (+)
XLOC_017628 stx7l coding upstream 7816 46213553 ~ 46232859 (+)
XLOC_017627 taar15 coding upstream 32691 46206998 ~ 46207984 (+)
XLOC_017626 taar13c coding upstream 37460 46202188 ~ 46203215 (+)
XLOC_017625 taar13d coding upstream 48020 46191630 ~ 46192655 (+)
XLOC_017631 taar14l coding downstream 3641 46245450 ~ 46246407 (+)
XLOC_017632 taar14h coding downstream 9135 46250944 ~ 46252080 (+)
XLOC_017633 taar14i coding downstream 13248 46255057 ~ 46256016 (+)
XLOC_017634 taar14j coding downstream 18771 46260580 ~ 46261653 (+)
XLOC_017635 taar14e coding downstream 27097 46268906 ~ 46270063 (+)
XLOC_017619 NA non-coding upstream 244243 45987917 ~ 45996432 (+)
XLOC_017618 AL929237.2 non-coding upstream 253892 45985461 ~ 45986783 (+)
XLOC_017617 NA non-coding upstream 338518 45900148 ~ 45902157 (+)
XLOC_017616 NA non-coding upstream 344135 45894168 ~ 45896540 (+)
XLOC_017613 NA non-coding upstream 398850 45836898 ~ 45841825 (+)
XLOC_017637 BX957286.1 non-coding downstream 36097 46277906 ~ 46279478 (+)
XLOC_017642 NA non-coding downstream 110104 46351913 ~ 46357028 (+)
XLOC_017643 NA non-coding downstream 120642 46362451 ~ 46367708 (+)
XLOC_017644 NA non-coding downstream 126637 46368446 ~ 46423475 (+)
XLOC_017646 NA non-coding downstream 200737 46442546 ~ 46523077 (+)

Expression


Co-expression Network