LOC110524896 (LOC106573068)


Basic Information

Item Value
gene id LOC110524896
gene name LOC106573068
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52943860 ~ 52955716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979943.1
tagttagctggctagcttctgaagtGGGTTCTGGTTCAAAAGTAggaaaaatagcagatccataccacattgggtgaggtgggttgcaggagagtatgttcagtccgtaGTTGGAAATGAAAAATATGTACAAATTATATACAAAGAATACGATATAGATGAGACATTTTCAGCTGCCCCTTTAAGGTTACTGTGGTAACGGGGCCATTCCAGTCATCACGTGCAGTGCCTGTGAGAATCTGAGGGACGGGACAAGTTAAAGCGGATCACTTTTGGTCAAGTAATTGACACCACCTTTCAGAGTGTGTTGCATTATGGTTATAAAAATTGTCCGGCTTGCGACTACATGTCGACTCCATGAACTTTACAAAAATCATGAAGTTGCTTCTCACCAACGGCACCATGCAGCAGCCATCACCTGCATTGTGTGGGGCACAATTTGCCTAAATGCATTATGGTGCGTTTGTTTGACTCACatatTGTTTGTAGCAGGCCTGTCCTTTGTCATCGGCTTGGAGCGTACCTTCAAATTCTTCTTCCAGAGACACAAATTTAAAGCCACAAGTTTCTTCCTGGGAGGGGTGCTGGTGGTTCTGATTGGCTGGCCTATCATTGGAGTGGTGCTGGAGATCTATGGATTCTTCCTCTTATTCAGGGGCTTCTTCCCAGTGGCAGTAGGCTTCATCAGGAGGTTGCCTGTCCTCGGGTCCATACTGAACCTCCCAGTGATTAGTGGATTTGTGGACAAAGTCGGCGAGAGCAACAATATGGTATAACAGTGAACATCTTTGGATTGGAGGATATGAAATGGCTTTACTCTATTTATAATAGTTTATATTGGTGACTTTTCTCTACTGGTCAACTACTGGCCAAGACTACCCCCATGTTAAAGGTCAAAGCTGTGAATCAGAAACCTCTTTCTGTTCAAAGGAAAACAATGTTTCTTTGGGCAGGCATATGAATACAACTGGTATCGTAAAGTTTCCTTTGACGGAAATGGTCTCATAACCTGGTTGCCATCGATGGACAATTGTTACCAAGGGACTACTTTATTTCAAGGCCCAATGGGTGAATTGGGCCCTTTTTGTGTCACTACCCGTTCCTGATCGACTGATTATGATGATTGACGTGACTGAACCAACCACTGGATTGGACATCGCTAAGGAGGAGAAGTCTTGAATCTGTTACAGCAGTCTTTCTTCTAGAATGTTGTTCTGGAATGTTGTCTGTACAGTCAGAGAAGTGTTTTGGTTACCTTGATGAAGAGTTTCTGGAATTTTTGTATGGCTGTTTAGAGTTGTGTTACACCTGGGTACTGTTCAGGAGGATGTAGCTTTACAGAACATTCCGATATTGTGTAGAACAGATATGATTGTCAGATAGTGAATTATGTCAGCTGTATTTACtccatttctatctgcaatgttcaGAATGTTTTGCATCATTAAATACTAAGCTGTTGAAGATGAATTGCCCTGTGCGCACAACGGGTCACAAATGGGTACATTCATTTAAGCTAGTCCAGGACACTAGGTGAGTTGAATTTACACAATTTAAACTATTCCTTCCTAAAGTGAAAATGTCCACCCACCTGGGGCACTGGGCGAGCTAAAACGAATGCAtccaatgctacagatgtctccaCAACCCAGATATTGATGGTCTCACAGCAGCTGGGGTTTGTCACTTTCTACTTAATGTATTAAGAGGTCTGTCAGAGAGAAGTTTTACTCAAATGTATCTTTTGTAAATACATACTTGaaatagtgtgttttaaaaacaaa
>XM_021604861.2
cacacacacatccccccatATCTTGACTTTTTAATCACAACTAAATCTCTACGCAGCACCGCGCAGAACTGTTTCCCGTGAACGTGTCATTTGAGCGTGAATGCATGAATCACGAAGAAGACGTGGCGCCAGCTTTTCCTCTGCTTCAACAAGCTACCGCTATCTAACGATTATTGAATGAGCACAAGTGATTTTCCAATCGCTACCCTTCCCGACAAAAATGATTTCTCTAACAGATTCACAGAAAATCGGGATGGGGTTGACAGGCTTTGGCGTGTTCTTCCTCTtctttgggatgatcctgttttTTGACAAAGCTCTTCTTGCCAttggaaatatatTGTTTGTAGCAGGCCTGTCCTTTGTCATCGGCTTGGAGCGTACCTTCAAATTCTTCTTCCAGAGACACAAATTTAAAGCCACAAGTTTCTTCCTGGGAGGGGTGCTGGTGGTTCTGATTGGCTGGCCTATCATTGGAGTGGTGCTGGAGATCTATGGATTCTTCCTCTTATTCAGGGGCTTCTTCCCAGTGGCAGTAGGCTTCATCAGGAGGTTGCCTGTCCTCGGGTCCATACTGAACCTCCCAGTGATTAGTGGATTTGTGGACAAAGTCGGCGAGAGCAACAATATGGTATAACAGTGAACATCTTTGGATTGGAGGATATGAAATGGCTTTACTCTATTTATAATAGTTTATATTGGTGACTTTTCTCTACTGGTCAACTACTGGCCAAGACTACCCCCATGTTAAAGGTCAAAGCTGTGAATCAGAAACCTCTTTCTGTTCAAAGGAAAACAATGTTTCTTTGGGCAGGCATATGAATACAACTGGTATCGTAAAGTTTCCTTTGACGGAAATGGTCTCATAACCTGGTTGCCATCGATGGACAATTGTTACCAAGGGACTACTTTATTTCAAGGCCCAATGGGTGAATTGGGCCCTTTTTGTGTCACTACCCGTTCCTGATCGACTGATTATGATGATTGACGTGACTGAACCAACCACTGGATTGGACATCGCTAAGGAGGAGAAGTCTTGAATCTGTTACAGCAGTCTTTCTTCTAGAATGTTGTTCTGGAATGTTGTCTGTACAGTCAGAGAAGTGTTTTGGTTACCTTGATGAAGAGTTTCTGGAATTTTTGTATGGCTGTTTAGAGTTGTGTTACACCTGGGTACTGTTCAGGAGGATGTAGCTTTACAGAACATTCCGATATTGTGTAGAACAGATATGATTGTCAGATAGTGAATTATGTCAGCTGTATTTACtccatttctatctgcaatgttcaGAATGTTTTGCATCATTAAATACTAAGCTGTTGAAGATGAATTGCCCTGTGCGCACAACGGGTCACAAATGGGTACATTCATTTAAGCTAGTCCAGGACACTAGGTGAGTTGAATTTACACAATTTAAACTATTCCTTCCTAAAGTGAAAATGTCCACCCACCTGGGGCACTGGGCGAGCTAAAACGAATGCAtccaatgctacagatgtctccaCAACCCAGATATTGATGGTCTCACAGCAGCTGGGGTTTGTCACTTTCTACTTAATGTATTAAGAGGTCTGTCAGAGAGAAGTTTTACTCAAATGTATCTTTTGTAAATACATACTTGaaatagtgtgttttaaaaacaaa

Function

NR:

description
Vesicle transport protein GOT1B

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979943.1 False 1784 mRNA 0.42 4 52943860 52947619
XM_021604861.2 True 1645 mRNA 0.42 5 52943860 52955716

Neighbor

gene id symbol gene type direction distance location
LOC110521107 LOC106573149 coding downstream 124918 52816161 ~ 52818942 (-)
LOC110532414 LOC106573136 coding downstream 128575 52810849 ~ 52815285 (-)
LOC110524843 LOC106573072 coding downstream 174696 52766482 ~ 52769164 (-)
LOC110524838 LOC106573075 coding downstream 190555 52744317 ~ 52753305 (-)
LOC118964326 NA coding downstream 261247 52681889 ~ 52682613 (-)
LOC118964864 NA coding upstream 54252 53007483 ~ 53020119 (-)
LOC110524937 LOC106573065 coding upstream 92024 53047740 ~ 53059946 (-)
LOC110524998 NA coding upstream 121942 53077658 ~ 53084723 (-)
ucmab LOC106573148 coding upstream 282619 53238335 ~ 53250903 (-)
LOC110525034 elk3 coding upstream 342647 53298363 ~ 53310125 (-)
G58485 NA non-coding downstream 2396 52941223 ~ 52941464 (-)
G58479 NA non-coding downstream 17309 52926223 ~ 52926551 (-)
G58469 NA non-coding downstream 18387 52924832 ~ 52925473 (-)
G58475 LOC106573070 non-coding downstream 28178 52912660 ~ 52915682 (-)
G58458 LOC106573071 non-coding downstream 54067 52887539 ~ 52889793 (-)
G58518 NA non-coding upstream 72639 53028355 ~ 53028714 (-)
G58519 NA non-coding upstream 74862 53030578 ~ 53032021 (-)
G58523 NA non-coding upstream 91876 53047592 ~ 53047671 (-)
G58596 NA non-coding upstream 249066 53204782 ~ 53205315 (-)
G57742 NA other downstream 447626 52495898 ~ 52496234 (-)
G56764 NA other downstream 1196640 51746617 ~ 51747220 (-)
G56372 NA other downstream 1539517 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 2151791 50777716 ~ 50792069 (-)
G55627 NA other downstream 2176429 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 183742 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 379008 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 470248 53425964 ~ 53426316 (-)
G58842 NA other upstream 632706 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 806239 53761612 ~ 53774544 (-)

Expression


Co-expression Network