G58458 (LOC106573071)


Basic Information

Item Value
gene id G58458
gene name LOC106573071
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52887539 ~ 52889793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU64997
CCACAATATACTTTCATCCTTGCTTGGGAAGCTAGCTGCTTGATCAAAGTCAAAAACATTTAATCTTTAATATATTCACTTGTGTAACAAGTAAACAAAGAGGTTCAGATTTAGGATAGCACTTTAAAAAAAAGCGACATCCTACTTTCACCTATGGTACTTTATTTTCctacaataaaataataaaaaagttCACAATTCACATTTGAAAAATACggaacaaaataaataacagttttttcttcttttttttcaaaCAGTGTGGACGAACATGTCAACTTCTTTACAAGTGAATGTCAGTAACTGGTCAACATAAGTGGCTATCACTTTTGTCATTATTACCTCTGCTATCAAGATGAAGTAAAATTAGAATAGGATCATGAGCCATTTACTTGCTCAACTTTATTTAGCAAAAATAGAATTCTTCCAAGATCCGTAGCAGTATGTATGGAACCATTAAGAAGGGCTGTGTGGATGCACTAAATATAAAGACAGCCAGTCCTAGGTCGTGTTCATTCGGCACCACATGGAAAAAAACACAGAATCAGAGAATATTTGTCCAATAAGGACTACCCACTTGTGTTTTCCTGTTTCAAAACTTTTTGCTACGGTGAGCATGCCCTTTAGATAGGACTGAAGGATCTTGAATCTTCAGAGCAACAAAGCACTAAAGATGAAACACAAAGCTATACTGGGATTTGGTCATCACAGACTGATGAGCCATTCAACTACCAGACCACTTACTGTTAGACAGGTCCTAAATCTGCTtttgctgtcttgccaactcctccTGACAATGACCAAGAGAGTTGGCAAGATAGCacatacagatctgggaccaggcttactTACTGCAGTTCATCTCCCCAACAGCTTTTCAATGTATTGATGGCTCTACACAAGCAGTTTAAAGACAACTAATAGTTTTAGCAATCAAACTCATAGTTTATAGCGTGAAAAAGGGCTTCTCCTCATTCAGTGACAAAACCTTATTTAACACTATTGGACAGTATTATGACTCCTCGCAGCAGTGATCCAATTAACTTAGAGCAAATTAGAATAGACCTGAGCACCATTCAATTCATAGTTTAAAAACATTATTCTACATATCTCTATTATTAATACTACAGTGTATATTCAAAATCCATACAGAAATACTTGTAGATATTTCCGTAATCagtagcagggttggggtcagttccatttcaattcaggaagtgcaCTCCAATTCTAATTCTCTCCAAAGTTTTTTATGAGGAACCTTTGGAATTTAGtctactttctgaattgactggaattgaaatggaattgacctcaaCCCTGGCACTATGCAAGTTCTAACAGTGTGCCTGGCACAACAGACACCCCGAAAACTACAACCATGTCCTTCAAAAACTACAACCATGCATGTGACCTGTCCTCGCAATATCACATGGGAGTTCTATCTACACACATAAGTGAAAAATACACACAAAGAATGCACAAAATGCACTTCACACTATGATTAAAAACAACTTAATAAAAACTAGTCTATTCAGACTGTCATGACAAGACAGTGCTGGTTTGTTTTACAAGAAGCTGGTGTTGGTTAGGTTGAATgcccttcctttctctccttaGCGGGGACGAGGAGAAGTGAACAAGGAAGGGACAGGGTGAGACAGTCTACCAGCCAGATTAAATGTCAGTCAGTCCTCCAAGATGGTCAACCATGTATAAATAGATGAAGATGGAGTTGGTGACCAGATGAAGGGGGTCTTTGACCTCTATTGGACAGCCTGGTAAAATAGTAGAAAGAATTATAATAAAAGAGAGCAGGGTGGAGTAGGTGTATTGCTTACTTGCCTCCACCCTCAGCTCCTGCACTTTGGCTGCTGCTGGCCCCCATGCCCAGAGGCACAATCACATTATCGACCACGGCATTTACCACCTTATCAACCGTGCTATACAGGTGAACCTTGGCGTCGTTTATCAAACCCTTGACGGACTGGACCTGATCTGCATCAAGGTGCTGGATGACGAAGTAGATGGAACCGGCTACAGTGATGAGCACCATGAGCTTTAGTAGGACAGAGAGGAATCCTTGCCTGGCCCGTTCTGAGCCCAGGGAGCTGCACTCAGAGTGAGACTCTGTGTAGATGGAGCGCTCCAGGAGAGACTTGTTCAGCCAATAGTTGCTGGGTTTCACCGGTCGGCCAGCCGCACCATGGATCGATC

Function

NR:

description
lamina-associated polypeptide 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU64997 True 2217 lncRNA 0.53 2 52887539 52889793

Neighbor

gene id symbol gene type direction distance location
LOC110521107 LOC106573149 coding downstream 68597 52816161 ~ 52818942 (-)
LOC110532414 LOC106573136 coding downstream 72254 52810849 ~ 52815285 (-)
LOC110524843 LOC106573072 coding downstream 118375 52766482 ~ 52769164 (-)
LOC110524838 LOC106573075 coding downstream 134234 52744317 ~ 52753305 (-)
LOC118964326 NA coding downstream 204926 52681889 ~ 52682613 (-)
LOC110524896 LOC106573068 coding upstream 54067 52943860 ~ 52955716 (-)
LOC118964864 NA coding upstream 120175 53007483 ~ 53020119 (-)
LOC110524937 LOC106573065 coding upstream 157947 53047740 ~ 53059946 (-)
LOC110524998 NA coding upstream 187865 53077658 ~ 53084723 (-)
ucmab LOC106573148 coding upstream 348542 53238335 ~ 53250903 (-)
G58141 NA non-coding downstream 21925 52865414 ~ 52865614 (-)
G58138 NA non-coding downstream 22974 52864364 ~ 52864565 (-)
G58080 NA non-coding downstream 104041 52779287 ~ 52783498 (-)
G58059 NA non-coding downstream 148511 52734088 ~ 52739028 (-)
G58475 LOC106573070 non-coding upstream 22867 52912660 ~ 52915682 (-)
G58469 NA non-coding upstream 35039 52924832 ~ 52925473 (-)
G58479 NA non-coding upstream 36430 52926223 ~ 52926551 (-)
G58485 NA non-coding upstream 51430 52941223 ~ 52941464 (-)
G57742 NA other downstream 391305 52495898 ~ 52496234 (-)
G56764 NA other downstream 1140319 51746617 ~ 51747220 (-)
G56372 NA other downstream 1483196 51400727 ~ 51412569 (-)
LOC110524514 borcs5 other downstream 2095470 50777716 ~ 50792069 (-)
G55627 NA other downstream 2120108 50765363 ~ 50767431 (-)
G58565 LOC106561659 other upstream 249665 53139458 ~ 53140304 (-)
LOC110525078 LOC105021811 other upstream 444931 53334724 ~ 53338484 (-)
G58718 LOC100194703 other upstream 536171 53425964 ~ 53426316 (-)
G58842 NA other upstream 698629 53588422 ~ 53588770 (-)
LOC110525178 LOC106581842 other upstream 872162 53761612 ~ 53774544 (-)

Expression


Co-expression Network