XLOC_020171


Basic Information

Item Value
gene id XLOC_020171
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8570105 ~ 8574907 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041875
tagtccctttattaacctggggtaaccacagcggaatgaactgtcaacttatccagcatatgttttacgcagtggatgcccttccagctgcaacccatcactgggaaacaaccatatacgcttattctcactcatacactacagacaatttagcctacccaattcacctgtaccccatgtctttggacttgtaggcaaaaccggagcacccagagaaaacccatgcaaatgcagggagaatttgcaaactccacacagaaatgccagctgatccagctgaggctcgagtcagcatccttgctTATTGGATGCCTGATTGCAGTTCAACTCTAAACTCAGTTTGGaccagctgatcagtgtcttcagtaGTACCACAAGCTACTGGGCAGATGTGTGGACAGCTATGAGCCAAATTTAGGACGTTTGGTTTTTAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcataGTCCTCCTGATCATTCTGTTCTCTTGGTTGTGAGGATGTGCAGAGGCTGTATTTGTCCGTGTTAAAAGACTTGTGCAGCTGTATCCAGACATACAAGCAGCCGACAAAGAGTTCTGGAGCAGGACAGCCAGGTAGTTCACAGTGGC
>TCONS_00041876
tggacttgtaggcaaaaccggagcacccagagaaaacccatgcaaatgcagggagaatttgcaaactccacacagaaatgccagctgatccagctgaggctcgagtcagcatccttgctTATTGGATGCCTGATTGCAGTTCAACTCTAAACTCAGTTTGGaccagctgatcagtgtcttcagtaGTACCACAAGCTACTGGGCAGATGTGTGGACAGCTATGAGCCAAATTTAGGACGTTTGGTTTTTAGGTAATACCAGTGACAAAGTATTCAGTAAATTGCTTATAATAAACGATGCTCACTGCTTACCCCCTTATAGTTAagttgtttgcagtttcattgttgtaaaaataccacactttttcctttttttatcagCAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaactttactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcTTTACAGTTTAGATACAATCAAATGTCCAAACCATCTCTGAGTGAATGACATCAAGGAAACAGGATCAAAAGATCTTTCATTATAGACCGTTTCATAGGTAACAGCACATCCTTTGtgaaaaaaagatatatttttgtgtcatcatcacaagacaaaatacatttcaactgatTTCAG
>TCONS_00041877
cagTATTGGATGCCTGATTGCAGTTCAACTCTAAACTCAGTTTGGaccagctgatcagtgtcttcagtaGTACCACAAGCTACTGGGCAGATGTGTGGACAGCTATGAGCCAAATTTAGGACGTTTGGTTTTTAGGTAATACCAGTGACAAAGTATTCACAGGTGGAGAGACCGTCTGGgcagcagaaacaagacaactaatcatagttgagttgagattagtattattaactttactagtttggttgcagacttgttcaatacttaacaatttgtataagttacaagatcaatggtcctgctatcaatgtttttgtaacttaaattcTTTACAGTTTAGATACAATCAAATGTCCAAACCATCTCTGAGTGAATGACATCAAGGAAACAGGATCAAAAGATCTTTCATTATAGACCGTTTCATAGTTGGTTTTATTTTTCAGGTCCTCCTGATCATTCTGTTCTCTTGGTTGTGAGGATGTGCAGAGGCTGTATTTGTCCGTGTTAAAAGACTTGTGCAGCTGTATCCAGACA
>TCONS_00041878
GATACAATCAAATGTCCAAACCATCTCTGAGTGAATGACATCAAGGAAACAGGATCAAAAGATCTTTCATTATAGACCGTTTCATAGGTCCTCCTGATCATTCTGTTCTCTTGGTTGTGAGGATGTGCAGAGGCTGTATTTGTCCGTGTTAAAAGACTTGTGCAGCTGTATCCAGACATACAAGCAGCCGACAAAGAGTTCTGGAGCAGGACAGCCAGggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggtcgctgcttcgagcttcggctggggcagttagcgtttctgtgtgaagtttgcatgctctccccgtgttggcgtgggtttcctccgggtgctccggttttcccaagtccaaagacatagattggtgtacgctgatggtctgctgagaattctgctgcgttgaagggatcctcctgtcagacaacctccaaagtacaataggactggGTTCCCACTACAAGGATTAGATTTGGCTACTGCAGTCCCGGTTTGGGCCAGCCTCACTTGTGAAGACTAAAGTTGAAGACAACATACAAGAACAATTTAGAGGATGGCAACACACTTTTTATTCCACCTATTTATCCCCTTTTATGTGTAAGCAACATTccacaagataaaacaaaactaaatgacaGGTTATATCTGttaattttgtctgttttcttggaacattgtacacaatttac
>TCONS_00041879
ACAATCAAATGTCCAAACCATCTCTGAGTGAATGACATCAAGGAAACAGGATCAAAAGATCTTTCATTATAGACCGTTTCATAGGTCCTCCTGATCATTCTGTTCTCTTGGTTGTGAGGATGTGCAGAGGCTGTATTTGTCCGTGTTAAAAGACTTGTGCAGCTGTATCCAGACATACAAGCAGCCGACAAAGAGTTCTGGAGCAGGACAGCCAGttggcctatattctgtttttctatgtttttggaaatgctgctgtgcatgaaaatgtgaCGATATATCCAGggcagcacggtggcgcagagggtagcacgtttgcctcacagcaagaaggtcgctgcttcgagcttcggctggattggtgtacgctgatggtctgctgagaattctgctgcgttgaagggatcctcctgtcagacaacctccaaagtacaataggactggGTTCCCACTACAAGGATTAGATTTGGCTACTGCAGTCCCGGTTTGGGCCAGCCTCACTTGTGAAGACTAAAGTTGAAGACAACATACAAGAACAATTTAGAGGATGGCAACACACTTTTTATTCCACCTATTTATCCCC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041875 False 624 lncRNA 0.47 4 8570105 8571394
TCONS_00041876 False 727 lncRNA 0.38 2 8570288 8571231
TCONS_00041877 False 534 lncRNA 0.38 3 8570621 8571339
TCONS_00041878 False 711 lncRNA 0.46 5 8571065 8574907
TCONS_00041879 True 583 lncRNA 0.46 6 8571068 8574807

Neighbor

gene id symbol gene type direction distance location
XLOC_020170 zmp:0000000984 coding upstream 16314 8551813 ~ 8553791 (+)
XLOC_020169 si:ch73-27e22.7 coding upstream 26476 8536838 ~ 8543629 (+)
XLOC_020166 NA coding upstream 74746 8375766 ~ 8495359 (+)
XLOC_020168 CABZ01046407.1 coding upstream 78845 8489400 ~ 8491260 (+)
XLOC_020167 CABZ01061501.1 coding upstream 129706 8407707 ~ 8440399 (+)
XLOC_020172 si:ch73-27e22.6 coding downstream 22067 8596974 ~ 8601775 (+)
XLOC_020173 CR450686.1 coding downstream 37555 8612462 ~ 8748801 (+)
XLOC_020174 NA coding downstream 46391 8621298 ~ 8761630 (+)
XLOC_020175 si:dkey-182g1.2 coding downstream 53157 8628064 ~ 8634560 (+)
XLOC_020176 CR450686.2 coding downstream 120189 8695096 ~ 8699930 (+)
XLOC_020164 NA non-coding upstream 213596 8339205 ~ 8356509 (+)
XLOC_020161 NA non-coding upstream 255237 8297633 ~ 8314868 (+)
XLOC_020159 CABZ01077220.2 non-coding upstream 304456 8265533 ~ 8265649 (+)
XLOC_020157 NA non-coding upstream 640833 7921536 ~ 7929272 (+)
XLOC_020181 NA non-coding downstream 246590 8821497 ~ 8837723 (+)
XLOC_020182 NA non-coding downstream 263518 8838425 ~ 8854534 (+)
XLOC_020183 NA non-coding downstream 311141 8886048 ~ 8894141 (+)

Expression


Co-expression Network