LOC110508823 (josd2)


Basic Information

Item Value
gene id LOC110508823
gene name josd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10226896 ~ 10229409 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589664.2
GATGCGCGTTGCAGAGAAATTCAGCGAGGACAAAAACAACGCTCAATTTACTGGGCGTGACAGTTGAACAACAACAATCAAGCTTCCGGTTTTTTCCCATTCTTACTAGAGAGTTCACTAGCATGTTCTTGTGAGCGTAAAATCGCACAATCAGCAAGTTTATGTATAATAGATTTACGTGTACACTAGgtacattttattattttgtttgtcGTGGAATAAGAGCACCGAAAGAGCTATTACTGACTTTGATACACCGCTTTATTTGGCCATTACACTGCGGACAACTTCCAATACGGGTTATTATGAGCGAAGGAGAGGTATTCCATGAGAAGCAGCGACTGGAGTTGTGCGCCATTCATGCTCTGAACAACGTTCTGCAAGAACAAGTGTTCACCAAGGAGACGGCAGATGACATCTGCAAGCGGCTAGCTCCACAATGTGTAGTGAACCCTCACCGCTCTATGCTGGGCACAGGCAACTATGATGTCAACGTCATCATGGCTGCCCTACAGAGCAGAGAGTTGGCTGCAGTATGGTGGGACAAACGCAGAACAGTACAGAGTCTCTGTGTTGACAAGGTCCAGGGGTTCATCCTGAACGTTCCGTCACGTGTCTCTCTTGGAATTGTGTCCCTCCCCGTCAAGCGGCGGCACTGGCTTGCAGTGCGCCAGGTTAATGGACACTACTACAACCTCGACTCCAAACTAAAGAGTCCTGTCTGCATCGGGAACGAAGCAGATCTCCGTACATTTCTCAGTGAACAGCTGTCTCCGGACGTGGCAGAGATGCTCCTGGTTGTGAGGAGGGACGTGGAGGAGTACGGAACTTGGCTGAACTCTGATGACCTCAGGAAGTGATTCCTCTGGCCTGGGCATTCCATTCATTCAACATGGGACTCAAACTCCTGCTCTACTCTGGaaaaacaaataacattttagaAAACAAGAGACTCTTAACAAAAAGTACATATTTCAGGAAATGCATTACCGGTTGCTGAGGAGTGTGGGCACTGTTACACAAAGTTCCAAAGAGAATTTAAGATGACGAGGGatttctgtcccaaatggcttgTTTGTAAGTTGACTGGCCTTTGTTTGGATTTCTACACTACAGCAGCATCTAtatcctctttccttctctctcttccttccttctcttctcttcctatGCACTGCACTGTCAAGGTAGACCAGTTAGAACTGGTTTGTCTTTTAGTTATTCTATGCACTGAGAAGGTACAGAGGAGGCACTGGATGTCATGTTGACAACTGACTGTGTGAAAATAACGCTTCTATGTTTGTGTTCTGTCTGCGTTTACATCTAACTGCATATCCAAGTGAATGGGAGTACTGTCTTTGTTACATGAgctcaaactacacacacactgaggataTAAAGAAAATGTTATTTATATGTAA

Function

symbol description
josd2 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Orthologous to human JOSD2 (Josephin domain containing 2).

NR:

description
josephin-2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K15235 JOSD; josephin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589664.2 True 1421 mRNA 0.45 5 10226896 10229409

Neighbor

gene id symbol gene type direction distance location
LOC118945753 NA coding downstream 35125 10191357 ~ 10191771 (-)
flcn LOC106577129 coding downstream 46647 10167784 ~ 10180249 (-)
LOC110508798 LOC106577146 coding downstream 62929 10160334 ~ 10163967 (-)
LOC110508790 grwd1 coding downstream 75751 10144533 ~ 10151145 (-)
LOC110520825 LOC106605761 coding downstream 97994 10099437 ~ 10128902 (-)
pitpnc1b LOC106593696 coding upstream 167655 10396551 ~ 10413072 (-)
LOC110508947 LOC106576934 coding upstream 602157 10831566 ~ 10847242 (-)
LOC110508966 u2af2 coding upstream 624293 10853702 ~ 10865262 (-)
LOC110508957 LOC106576897 coding upstream 636126 10865535 ~ 10876129 (-)
LOC110508973 LOC106576890 coding upstream 649300 10878709 ~ 10895912 (-)
G223148 NA non-coding downstream 7547 10217461 ~ 10219349 (-)
G223115 NA non-coding downstream 73190 10153345 ~ 10153706 (-)
G223112 NA non-coding downstream 83073 10143309 ~ 10143823 (-)
G223081 NA non-coding downstream 137534 10086852 ~ 10089362 (-)
G223163 NA non-coding upstream 33851 10263260 ~ 10266898 (-)
G223169 NA non-coding upstream 69052 10298461 ~ 10298666 (-)
G223172 NA non-coding upstream 77278 10306687 ~ 10306960 (-)
G223173 NA non-coding upstream 77894 10307303 ~ 10307626 (-)
G223175 LOC106605776 non-coding upstream 81745 10311154 ~ 10311493 (-)
LOC110508724 prpf31 other downstream 203693 10019313 ~ 10024005 (-)
G223070 NA other downstream 212004 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 224002 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 543525 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 553457 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 841537 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 942711 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 1046508 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 1497953 11727284 ~ 11741584 (-)
G224869 NA other upstream 1523442 11752851 ~ 11753680 (-)

Expression


Co-expression Network