LOC110519977 (csn8)


Basic Information

Item Value
gene id LOC110519977
gene name csn8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42175881 ~ 42205548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596910.2
CCTGCTGTGCTGAAGGGAGACACATTTTCCGCAGAGTTGGGCCtttttcttcctctctgctgACGAGACGCCGGTGAACGACACTATGCCTGCCGTAGTTATAATGGATGAAAATTATGATAAACTTTTAGAGCAGTGCCAAACACAGGAACTTGAGGCTCCAGGTGGCATTGCAACCCCTCAAGTGTATGCCCAGCTGTTGGCTCTCTATCTACTGCACAATGACATGAATAATGCCAGGTACCTGTGGAAGCGAATTCCTCAAGCCATTAAATCGGGAAACCCAGAGCTGACGGCCGTGTGGGCCGTGGGTCAGCGCATATGGCAGCGAGACTTCCCAGGGATCTACTCGGCCATTGCAGCTCACCAGTGGTCTGAGAACATCCTGCCCGCCATGGATGCCCTGCAAGAGACCACACGTAGGAGGGCCTATGGCCTGGTGGCCCAGGCATACACCTCCATCACGGCAGAAGACTTTGCCGCCTTTGTGGGCTACTCTGTGGAGGAAGCCGTGAAGGGGGTGGTGAGCCAGGGCTGGCAGGCAGATCCTGCCACCAGGATGGTAATGCCCCAGAAACCAGATCCTCCCCCTGTCTCGCTGGTTCCAAACGAGCAGCAACTGGCCAGACTCACTGACTACGTGGCTTTCCTTGAGAACTGATCAATTCCCTTCAGCCCCGTTTGTCTGCCGTGAGGAGGACTCCAGAACGCCCCTCTTCCAGAGCTTAGATGGACACACGCACCATACACACAcgcaccatatacacacacacacacacagacacgcatgcaGGACCTCAAGCTCACCCCCCTTGTGCATGATTGTGGTCATGTCTCTGGGAGCGAGACACCATGTTTTCAGAAAGATGGGCCTCAGACTTACGATTCAGTTCGTACGCCCACTAACTCTGTTGTTGGGCAATCCTTAGTAAATGACTGCGACTTTACTGCGTCTTTACGAAGTGGCAGTCTCAATGATTGTAGTAGTTAATTTAATGTCATTTCTGTAAGAAAAATAATACTATTTTCATGCGCACGTTGGAAGAATTTGATTGTCCGCAGCCGCCCAATTATGTGAGAAGTCCCGCATCAGACTCTAACCCGCAAATAGGCCGAAAATTGGACAGGGTGCaagatttatttttttactaataatttccaacattttggtaggctatttgttcaTCAACTTTTCTATAATTATAtgcatgcagcttctcttctgtcattactgccctagaagactaaataaacccttgttCACCAGAATGTCGTAAATCGGTGAACGCTTCAAtcttgttgacttctgtaaagttttctctttcatctctgcttctctcctgcAGGAGAGGTTTAGGGACCGGAGGGGTAAatgcaataaaacattttttaaagattttctgtg
>XM_036974103.1
aattagctagcaacagcaggcTAGCTAAatatgacaaattagctagcaagtgcaagctagctttttgacctgtccccaaattaatataattggttcagagtttgttttgatatttcaacctgcttgTCGTGAACGCATTTGGTattggggggacaaaatacatttatttatgaTGGCGCACGTGTGCAGCCGATTTTGGTTCCGTGAATTAGCCAATGTGTATTGTTGTCACGTAAGAGGTCAAGGGATGTTTCTGGCACCGTTTTATATAAACAGAAGTTCGCCAGAGAGAAATCCCCATACTTTACATTCGCGCTTGCTGTTTGTACATATCATGCTTGCCGTTTGTACATTTTATAGACGATGGCAAACGAGAGTTCATTGACCTGGTCCATTGCGGAAACAAAGCTTCTGATATCCATTTGGTCGCAAAATCAGATTCTAGCGAGGTTGAAAGCGTGGTACAGAAAAAGAGATCTATATTGAGAATGTCCACGGGGTTGCTCGAACATGGCCTCCATTGTTCGGAAGTAGTGCCAGACAAAAATCTGAGACATTAAATATACATAACACAAGACGAAAGACAATAATGGACTGCGTGATAGTGGCCGGGAGACCTGTCCATTCTACAGGGAACTGGACGAATTCCTTGGCACATGACCTGCCTCCATGCCTCGCCATATTATTGAGTCCAGGGTGACTGAAGCAGAAGAGCAAGAATATGGCAAGTACTTTTTTTGGCTTTGTGTTCTTGTAGCCAACAAAATAAGTCTGGACACTATCCTAATGtattagccagccagccaactaCCTATAAGTTATATGAATCTAAATGATCACTACTTCATGTTATTTTCTGCTAGCTGCCTGCTAACAAAGCTCACGTTTTATAACGTAAGTGATTGTTGCTTAGCCTGTTCGTAAACTTTTCTTTTCACTCTCACCCAAATGATTGCAATGACTAGGAACTAGTTAGCTATTTCACAACTACTTTATGTTGTTGACTGCTAGCTGCTTGCTAACAAAAGTCACTGTTCATAGCGAATGTATTTTGTTTGGTAACTTTGCTTATTACTTGCTCTCCCACAGACTGATGAAGGGCCAAGCAGCAACCCTGGGCCCAGCAGCAGTTGCAACACTCAACCTGGCTGCAGTTCCAACTGAGCGGTCTGTGTACCTCCCAAGTCCAGACAACTCATCTCTTGGCTCGAGGAACCCTCCTCGAGCCACCAAAAAACCTCTTGCACGTGTTGAGACCACACGTAGGAGGGCCTATGGCCTGGTGGCCCAGGCATACACCTCCATCACGGCAGAAGACTTTGCCGCCTTTGTGGGCTACTCTGTGGAGGAAGCCGTGAAGGGGGTGGTGAGCCAGGGCTGGCAGGCAGATCCTGCCACCAGGATGGTAATGCCCCAGAAACCAGATCCTCCCCCTGTCTCGCTGGTTCCAAACGAGCAGCAACTGGCCAGACTCACTGACTACGTGGCTTTCCTTGAGAACTGATCAATTCCCTTCAGCCCCGTTTGTCTGCCGTGAGGAGGACTCCAGAACGCCCCTCTTCCAGAGCTTAGATGGACACACGCACCATACACACAcgcaccatatacacacacacacacacagacacgcatgcaGGACCTCAAGCTCACCCCCCTTGTGCATGATTGTGGTCATGTCTCTGGGAGCGAGACACCATGTTTTCAGAAAGATGGGCCTCAGACTTACGATTCAGTTCGTACGCCCACTAACTCTGTTGTTGGGCAATCCTTAGTAAATGACTGCGACTTTACTGCGTCTTTACGAAGTGGCAGTCTCAATGATTGTAGTAGTTAATTTAATGTCATTTCTGTAAGAAAAATAATACTATTTTCATGCGCACGTTGGAAGAATTTGATTGTCCGCAGCCGCCCAATTATGTGAGAAGTCCCGCATCAGACTCTAACCCGCAAATAGGCCGAAAATTGGACAGGGTGCaagatttatttttttactaataatttccaacattttggtaggctatttgttcaTCAACTTTTCTATAATTATAtgcatgcagcttctcttctgtcattactgccctagaagactaaataaacccttgttCACCAGAATGTCGTAAATCGGTGAACGCTTCAAtcttgttgacttctgtaaagttttctctttcatctctgcttctctcctgcAGGAGAGGTTTAGGGACCGGAGGGGTAAatgcaataaaacattttttaaagattttctgtg

Function

symbol description
csn8 Involved in several processes, including COP9 signalosome assembly; animal organ morphogenesis; and protein deneddylation. Part of COP9 signalosome. Is expressed in adult heart and organism. Orthologous to human COPS8 (COP9 signalosome subunit 8).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596910.2 False 1405 mRNA 0.49 7 42175881 42205548
XM_036974103.1 True 2248 mRNA 0.45 4 42192171 42205548

Neighbor

gene id symbol gene type direction distance location
LOC110519975 LOC106586062 coding upstream 15195 41987255 ~ 42160686 (+)
LOC110519974 LOC106586063 coding upstream 210640 41922501 ~ 41965278 (+)
spegb LOC106586064 coding upstream 260559 41786953 ~ 41915322 (+)
LOC110519972 sdpr coding upstream 408269 41740090 ~ 41767612 (+)
LOC110519971 tmeff2 coding upstream 450126 41554471 ~ 41725755 (+)
LOC110519988 LOC106586103 coding downstream 255989 42461537 ~ 42534154 (+)
LOC110519991 cssa25h2orf47 coding downstream 338073 42543621 ~ 42550621 (+)
pgap1 pgap1 coding downstream 356592 42562140 ~ 42590366 (+)
LOC110519981 hecw2 coding downstream 411021 42616569 ~ 42682056 (+)
LOC110519990 stk17b coding downstream 490998 42696546 ~ 42715828 (+)
G258539 NA non-coding upstream 105669 42019252 ~ 42070212 (+)
G258538 NA non-coding upstream 158858 42016740 ~ 42017023 (+)
G258447 NA non-coding upstream 325650 41850004 ~ 41850231 (+)
G258446 LOC106608106 non-coding upstream 326118 41849351 ~ 41849763 (+)
G258650 NA non-coding downstream 22118 42227666 ~ 42227968 (+)
G258657 NA non-coding downstream 27557 42233105 ~ 42233311 (+)
G258664 NA non-coding downstream 36315 42241863 ~ 42242082 (+)
G258682 NA non-coding downstream 118923 42324471 ~ 42327172 (+)
G258784 NA non-coding downstream 238316 42443864 ~ 42444118 (+)
LOC110519969 LOC106586020 other upstream 1723701 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 2507793 39658753 ~ 39668297 (+)
G254816 NA other upstream 3331325 38843510 ~ 38844556 (+)
G254445 NA other upstream 3575015 38600487 ~ 38600866 (+)
G254204 NA other upstream 3734147 38441166 ~ 38441734 (+)
G261749 NA other downstream 2046521 44252069 ~ 44252551 (+)
G262037 NA other downstream 2314871 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 3633373 45838921 ~ 45839480 (+)
G263710 NA other downstream 3728571 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 3869936 46075484 ~ 46079425 (+)

Expression


Co-expression Network