LOC110519971 (tmeff2)


Basic Information

Item Value
gene id LOC110519971
gene name tmeff2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41554471 ~ 41725755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596899.2
TGAGGCGAGCGCAACTGACGGACTCACTGAGCGTCTGAACACAACTAGCCGACCACTCATTTAAGCCCGTGGCATTTTTGGATATTACTAGGACGTCGCCGTTTCGAAACCGTGGGATATAAACATTCTTTGTTTCTATTTCTTCCTTCCACCCACAcctttttttatttgttattttctaTCCTCATGGGTGAACATCGTTCCTCTTCCTGCCCGTCCTCTTACGCTGATTTACCTGgctaaccccccccctcccccccaacacTATCCTACACCCTCCATCGCCCCACTCCCCCAACCGCCTTCATATTGTAGCTGCACCACATTGGATCGGGCGGAACCCGTTGATTCATCACTTCATGGGGCTCGCTTTCTTGCACGGAAAATGTCCCTTTCTTTGTCACTGAGCGCCCCTCTGAAACAGCCAACGTCTGGACCGGAGTTGTTGGTGCGTGTCTACCACTTCTGCCCAGCTCGCTTGTGTAGTCGGGGAACGCCGCTGAACTGAGATGGGTCTGTCGGTGGCGGCGGAGCCCCGACGCCCGAAGCAGTGGAGCCGGACAGTGGGAGATTGGGTCTGGATCACCGTTGTTTCGTTTCTCGCTACTTTACCTGTAGAGCAACTTTGCGCTTTCCCGTCTTCCCTGAGCGACTGTCAGACGCCTACCGGCTGGAACTGCTCTGGTTTTGATGACCGGGACACAGATCTCTTCTTGTGCGACACCAACACCTGCAAGTTTGACGGAGAGTGTTTGAGAATTGGAGAGACCGTGACGTGCATCTGTAACTTCAAGTGCAACAATGACTACGTCCCCGTGTGCGGCTCCAACAATGAGAACTACCAGAACGAATGTTATCTACGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTGCTGGTGGTGTCAGAGGGCTCTTGTCCTGTCGatGTCGGCTCAGGCTCGGGAGATGATGGGGGTGAGGGGTCAGCGGAGACTGGGCAGAAGGAGACGTCTACCTGTGACATCTGCCAGTTTGGGGCGGAGTGCGATGTGGACGCAGAGGACGTATGGTGCGTGTGTAACATTGACTGCTCCCACATCAGCTTCAACCCAGTTTGCGCCTCAGACGGCCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCTTGTCAGAAGCAGGAGAGGATCGAGGTTAAATACCTGGGCCACTGCCAAGGTGACATCATGACAGGGACCAAAGCCGGAGACGGACACTATGCCAGGAAAGACTACTCAGaagagAAGCcggaccagagaggagaggtggccaTAGGGTTGTATATTCCCTGTCCCGAGCTCTACAAGAACTACTGTATCCACGGAGAGTGTGAATACCCCAACATACTGTCTGTGCCGTCCTgcagctgTCACTCAGGCTTCAGCGGGCCCCATTGTGACACTAAGGAGTTCAATGTGCTCTACGTGGTCCCCGGCTCTGGCAAGCTGCGCTACATCCTCATCGCCTCCATCATCGGAGCTCTTCAGGTGGCCATCATCTGTGTGGTGGTACTCTGTATTAccagGAAGTGCCCGCGGAGCAACAGGGTCAATCGGCAGAAGCAGAAGGCCACCCACTACAGCTCAGAGAACACCATGCGCGCCTCAACCCGCCTCATCTGACTGAGCCTCCCCACAATGGAGGAAACCCTAAGATTCGCTCCGCTCTGGGTCCAAATTGCACCAtagacacagatctaggatcagctttacCCTTCTTTCCTACAATCCCAACCTGAATTAACTATAAGGGAGTGGGTGGTGGGAGGGGgacaaaactgaccttagatcggCATCTAGGAGGTTGCACAATCCCCAACTTGCCGACCCCGATCATGAGGAATTGAACAATGGGGATTGGGGGGGAAACAAtggggattggggggggggggggggggg

Function

symbol description
tmeff2 Acts upstream of or within negative regulation of cell migration; negative regulation of cellular component organization; and wound healing, spreading of cells. Predicted to be located in extracellular region. Predicted to be active in basement membrane and plasma membrane. Implicated in prostate cancer and urinary bladder cancer. Biomarker of prostate cancer.

NR:

description
tomoregulin-2-like

GO: NA

KEGG:

id description
K23608 TMEFF2; tomoregulin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596899.2 True 1916 mRNA 0.55 10 41554471 41725755

Neighbor

gene id symbol gene type direction distance location
LOC118944668 NA coding upstream 693291 40858297 ~ 40861180 (+)
dnah7 dnah7 coding upstream 851793 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 1101929 40440040 ~ 40452542 (+)
asmtl asmtl coding upstream 1772067 39769763 ~ 39782404 (+)
LOC110519965 LOC106586023 coding upstream 1785045 39745774 ~ 39769426 (+)
LOC110519972 sdpr coding downstream 14335 41740090 ~ 41767612 (+)
spegb LOC106586064 coding downstream 61198 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 216344 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 261500 41987255 ~ 42160686 (+)
LOC110519977 csn8 coding downstream 450126 42175881 ~ 42205548 (+)
G258000 NA non-coding upstream 175066 41379018 ~ 41379405 (+)
G257901 NA non-coding upstream 283838 41270428 ~ 41270633 (+)
G257624 NA non-coding upstream 301819 41175003 ~ 41252652 (+)
G257482 NA non-coding upstream 574376 40979731 ~ 40980095 (+)
G257435 NA non-coding upstream 608343 40945754 ~ 40946128 (+)
G258228 NA non-coding downstream 27 41725782 ~ 41726046 (+)
G258395 NA non-coding downstream 52944 41778699 ~ 41778904 (+)
G258396 NA non-coding downstream 54420 41780175 ~ 41780484 (+)
G258443 NA non-coding downstream 119691 41845446 ~ 41845660 (+)
G258444 NA non-coding downstream 121327 41847082 ~ 41847372 (+)
LOC110519960 LOC106586058 other upstream 1886383 39658753 ~ 39668297 (+)
G254816 NA other upstream 2709915 38843510 ~ 38844556 (+)
G254445 NA other upstream 2953605 38600487 ~ 38600866 (+)
G254204 NA other upstream 3112737 38441166 ~ 38441734 (+)
G261749 NA other downstream 2526314 44252069 ~ 44252551 (+)
G262037 NA other downstream 2794664 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4113166 45838921 ~ 45839480 (+)
G263710 NA other downstream 4208364 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 4349729 46075484 ~ 46079425 (+)

Expression


Co-expression Network