G258396


Basic Information

Item Value
gene id G258396
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41780175 ~ 41780484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU294181
ttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcacctgcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcct

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU294181 True 310 lncRNA 0.44 1 41780175 41780484

Neighbor

gene id symbol gene type direction distance location
LOC110519972 sdpr coding upstream 12563 41740090 ~ 41767612 (+)
LOC110519971 tmeff2 coding upstream 54420 41554471 ~ 41725755 (+)
LOC118944668 NA coding upstream 918995 40858297 ~ 40861180 (+)
dnah7 dnah7 coding upstream 1077497 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 1327633 40440040 ~ 40452542 (+)
spegb LOC106586064 coding downstream 6469 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 161615 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 206771 41987255 ~ 42160686 (+)
LOC110519977 csn8 coding downstream 395397 42175881 ~ 42205548 (+)
LOC110519976 LOC100194537 coding downstream 415982 42196466 ~ 42198481 (+)
G258395 NA non-coding upstream 1271 41778699 ~ 41778904 (+)
G258228 NA non-coding upstream 54129 41725782 ~ 41726046 (+)
G258303 NA non-coding upstream 76670 41631939 ~ 41703505 (+)
G258000 NA non-coding upstream 400770 41379018 ~ 41379405 (+)
G257901 NA non-coding upstream 509542 41270428 ~ 41270633 (+)
G258443 NA non-coding downstream 64962 41845446 ~ 41845660 (+)
G258444 NA non-coding downstream 66598 41847082 ~ 41847372 (+)
G258445 NA non-coding downstream 68247 41848731 ~ 41848991 (+)
G258446 LOC106608106 non-coding downstream 68867 41849351 ~ 41849763 (+)
G258447 NA non-coding downstream 69520 41850004 ~ 41850231 (+)
LOC110519960 LOC106586058 other upstream 2112087 39658753 ~ 39668297 (+)
G254816 NA other upstream 2935619 38843510 ~ 38844556 (+)
G254445 NA other upstream 3179309 38600487 ~ 38600866 (+)
G254204 NA other upstream 3338441 38441166 ~ 38441734 (+)
G261749 NA other downstream 2471585 44252069 ~ 44252551 (+)
G262037 NA other downstream 2739935 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4058437 45838921 ~ 45839480 (+)
G263710 NA other downstream 4153635 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 4295000 46075484 ~ 46079425 (+)

Expression


Co-expression Network