LOC110519972 (sdpr)


Basic Information

Item Value
gene id LOC110519972
gene name sdpr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41740090 ~ 41767612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596901.2
GAGAATCCTTCTTCCCTTCTCAGTCCTTCTCTggagcaacaacaacaacgtcAACTAACTGACAGAGACTCTTCACATCTCAGAACAAGTCTGTCCACATTTCCCTCCACTTCTAGCCCTCTAACTTACTTAAACCCTTCAAAAGAGGACATTTAACCCCACCACTCTGTGGCCATGGGAGAAGACTCATCGCACGCCGAgcgcagcagcaacagcagcagcatttTGGTCAACCCCCAGCAGTACCAGGCACAGCAAGACAACATGGACCTCCTGGTGTCCAGCTTCAGCCCGAGCCCAGCTCCCTCGTCCCCCACCAACACCCTCTCCAGGCTGGGCTTGAAAACCCCTGGGAGCCTCGGACCTGGAAGTCCCACCAGTCCCACTGCCAGGGACCAGGTGAGCGCCATCACAGTGGTGGCTCTACTCGACAAGCTGGTCAACATGCTGGAGGCAGTGCAGGAGAACCAGCAGCGCATGGAGTTGCGTCAGGCCGACCTGGAGGGAGCCGTACGAGGGGTCCAGGGTGACGTGACCCGCCTTTCCAAGAACCACACCAGCACATCCAACAGCGTTAACAAGCTGCTAGAGCGCTCACACAAGGTCAACACCCACATGAAGGAGGTGAGGGAGCGGCTGGACAAGCAGGCGTCACAGGTGAAGCGGCTGGAGGCCAACCATGGACACCTGCTAAAGAGGAACCACTTCAAAGTTCTCATCTTccagGAAGACAATGAGATCCCCTCCAGCGTGTTCATCAAGGACTCCCCCAAGACCCCCCAGGCCAGCCAGCTGGAGGACAACGCTCTTGCGGCGCCTGCCCCGTCCGTCGCCGGCACAGACGCCAACCGCTCCCAGGAGGAGGGTCTCCATACCATCAGCTTGTCCTCCTCCGACGATGATGCTGGGGGTCACCAGGAGGAAGACGAAGCCCTGGAGGAAGAGGCAACGCTGGGTCTGGGAGCAACCCGGCCCTCCGTTGAGAGATCCAGAGCAGACCGGCTGAAGCGCTCCAGTCTGAAGAAGGTGGACAGCCTGAAGAAGGCTTTCTCACGCCAGAGCATCGAGAAAAAGATGAGCAAGATCAGCACCAAGATTGTGCCGACAGCGAGCCGCGAGAAGATCAAGAAGAGCTTCACACCAAACCACCCAAAGAGCCCTGCCTCCAAGAGTTCCTCATTCAAGGTGTCGCCAATGACGTTCAATGTGAAGAAGATGCGTGGTGAAGGGGAGGACTCAACCCAGCCCGGAGGCTCGCCTAGCGGGCATGCCCACGTGGATATCCCTCCCCTGGGAAGCATGGATGGGGATCTGCCCCTGGCCGAGGTGCATTCCCAGGAAGTGCTgggtgtggagggaggagaggagctggCTAGTCCCTCTAGCACTGGGAGCGTAGAGGCCAAGCTGACCTTCAATGGAGAAGCAGGGGGCCTGGAGTGTCACCTGACCACTGATCGTCCGGCGGGGCTCGCTGTCCCGGAGCATGATGATGAtattggagaggaggaagaggaggatgatgaagaggaggagcaggagagccCGGTGGAGGTGAAAGCTCCCATACCTTCTGCTACTGGAATCACTGTGGAGCAAGCCTCTTAATCGCATCCACCTCAACCTTTGCTCCTGCACATTCCCTGCCCTCTTTATATTACCATGCCAACAGTATAGTCATCCCTCCGTCTTTCCTAACCATGTTTCCGAGATATCTCctagacagacacacatgcacacacacgcacgcatgcacacacatggacacacacacacaatgtatatacaCAACATGAAAGACGTGTCCTTAGCAGAACTATTCCTGAAAAAACTCAAGCTCCTGTGCCAGCGATACAGGCCATCCCATCAAGTGATCCTGCATCATTTgctcctgcctggtgtgtttaactaGCTACCCTTCTGTGGGGCTACCTTAAGAAAAGAACCAGTGTGCCAAGAGACTATTACTCACCTTCCCAACTGGAACCTTGCTTCTGTTTCAAGAGAACAGCACATCTCCAGTACACTGAGCcaactatctctctctatttgtctgtctctgcatgggcctctctgtctgtctgacagataGTCTCTTTGTTCCTCTGCCTCGTGTGAATGCCGGTAAATCTCTGGCAAAAAAGGTAAAGCCCCACAGTTTGGGGATGGTAGCTTGTTGCCAGGCAGTCTGGGCATTGGTATGGTTGGTAGCTAGGTTTCTACAGCAAGGGTGGTGTAAGGCTGAAGGGATATAGGGCTGTAATATGTCCAAATGCTCTGCCTGAAAATAGCTTCTTATCTTCATCAAGGATATTTTTATTATTTCAGAGAGCGGGTTCAATGTAAGAAGGGGGATAGGGAGGAAGTACGACGAGAGAAGGAAAGTCGTTTAGAGTGTTCGGATGAGTCAAATACATGTGGCAAATGCGGTGTGCTTCATTTTGCTTATAATAAAACCATTGGAATAGTCCCAAAAAGTGCAAACTCTGCACCTCAGGCATGTGGATGAAGCTGAATCAAGCACACCTcaggtatttgaatgtttgtgaTACATGTATTTGACCCATGTCTTGATGTAACCACACAACCTGAGTGCAGGGTAAAAAAAGAGCCATATAATTGAGGCAGTTTTGTGCCATCCCTACCTTAGTTTATTTGCCTTAATAAATACTCACCAGAACAGAAAAACTGCTTGAAAGTGGTTAATGGTTCACTAGGTACAGACCACACCTTCAATATTTGAGGAGAGTAAGTTGAAATAGCTGTCTTGTGTTAACGTCTACTGGCGTCTACCTTAAGGCTCTACATACTGGGACTTTCCTAAACCACCCTATATCAGGGCAATTCTAATCTTATGTGTATGTACATATTCGATTATGGGATTATCAGTGGGTATAATGATTTATATAGAATCATGTTTGTTGAATACTGTCAAACTTTATCGGGTACTGTCTCCTGAGTATTGTACTTCCATAATATTATAGTCTAACAATGTGGACTTTTGGAGTTGATCACTCACATAAACAAGGTTTGAATAGCATAAACAAGCATAAACAAGCATTTACACATTGTTATATGgttgaaacacacacatgcacacacaaaacaTTAAAGGAAGACTCCACCCAAAatctattttggtatttgtttcattagtccattgttgatatattcccaaaatgctttgcatgtcagcaatcaagttaagatatgtaactttcaaaatacagaaatacagcggGTATGATGATTGGTGGAATTGTCCTTAATAAACTAGCACACATTTACAGAGGCACCCACACAGACATTCACTCACATGCTCCTGCACGCACGGAAGCCTTGAAACTTAGGCCTACACAAGCTGGTGTGAGTAATTGCTGTCCCGGAGCGAGGAATTCCTGCATGTTTTAGAAGATAAGAGTGATAGTGAAAGATTCCATTCCTTTAAATTCTCTCCTTTTGGAATCTACTTGCTCGTATCACTAAGGGAGGATAGTTCATCTAATCTATGTGCAGCACTTGCCACTAACTTGTGGCTACTGTTTATATGGTTTCATATCCATAAGATGGAATGGAATTTAAACCCCTCTGTGGGGAGTATATGCAGTATCAGCCTGAACTTCATGGTTAGCATCCCCTGGCCTATTCCTTTCTGATTACAAGTGCCTTGCAACCAGTCAGTGCCTAGTACACACTTAGGGGCCTCCAAAATATATAGGTGTCTAATGAAATGTAATTAAAAACAGAATGAAACCATTAAGCAGATTATGTATTGTATGTTATTTCTCAGTTGAGAGAGATCttggagaaagggaaagagagaaggagaggcagagcagagaggcATTCCTGGGTTTGACATATGACTCTTTGGCAGCCCATTTTTCATGCACTACCCTCTCTGCCTGGACGTGGCGGCAGGGGGAACTGGGGCCCTCATGGGCCACAGGTGTGTTGCCCCCAGGGAGGCCCCTGGGCACTGGCTCActaggaaggaggggaggaagggagggatgaggATGAGAAGGGTAGATCATTTAGAAAAACATTGTTTTTGGAACTGTGGGAGTAGAACAGAAAATGGGACAGGTTGCATCCCGATTCTCCACACTCAGTGTCATGAATTTAAAAATTGTGAAAACTCCCTCCAGCTAATGCCAACACCAATTCAATTATATGAAATCCATGATTGGAGAATAAGGACCCGTGTTTTGAGAGGAGGTATAAATTGAAGAGAGATATGTCCAATTGTTTGCGCACCGGCATGGCCTTACATTTTTTAACCACAAGCTATATACTCTTTCTATCTATCCATCACAGAGacatctcctctttctctccctgatgctctctcacacaaacgcacacgcacattctctctctccccatttgtCTCACACtcatctttctctcactctcttctaaAAGCGCAGCCCATCTCCAATCaatggtgtgtattcatggatgccaagggaagccaggcttccccccaCACAAAATGTagcaataaaaaaatacaaaatcaaaA

Function

NR:

description
serum deprivation-response protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596901.2 True 4528 mRNA 0.48 2 41740090 41767612

Neighbor

gene id symbol gene type direction distance location
LOC110519971 tmeff2 coding upstream 14335 41554471 ~ 41725755 (+)
LOC118944668 NA coding upstream 878910 40858297 ~ 40861180 (+)
dnah7 dnah7 coding upstream 1037412 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 1287548 40440040 ~ 40452542 (+)
asmtl asmtl coding upstream 1957686 39769763 ~ 39782404 (+)
spegb LOC106586064 coding downstream 19341 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 174487 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 219643 41987255 ~ 42160686 (+)
LOC110519977 csn8 coding downstream 408269 42175881 ~ 42205548 (+)
LOC110519976 LOC100194537 coding downstream 428854 42196466 ~ 42198481 (+)
G258228 NA non-coding upstream 14044 41725782 ~ 41726046 (+)
G258303 NA non-coding upstream 36585 41631939 ~ 41703505 (+)
G258000 NA non-coding upstream 360685 41379018 ~ 41379405 (+)
G257901 NA non-coding upstream 469457 41270428 ~ 41270633 (+)
G257624 NA non-coding upstream 487438 41175003 ~ 41252652 (+)
G258395 NA non-coding downstream 11087 41778699 ~ 41778904 (+)
G258396 NA non-coding downstream 12563 41780175 ~ 41780484 (+)
G258443 NA non-coding downstream 77834 41845446 ~ 41845660 (+)
G258444 NA non-coding downstream 79470 41847082 ~ 41847372 (+)
G258445 NA non-coding downstream 81119 41848731 ~ 41848991 (+)
LOC110519960 LOC106586058 other upstream 2072002 39658753 ~ 39668297 (+)
G254816 NA other upstream 2895534 38843510 ~ 38844556 (+)
G254445 NA other upstream 3139224 38600487 ~ 38600866 (+)
G254204 NA other upstream 3298356 38441166 ~ 38441734 (+)
G261749 NA other downstream 2484457 44252069 ~ 44252551 (+)
G262037 NA other downstream 2752807 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4071309 45838921 ~ 45839480 (+)
G263710 NA other downstream 4166507 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 4307872 46075484 ~ 46079425 (+)

Expression


Co-expression Network