LOC118944668


Basic Information

Item Value
gene id LOC118944668
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 40858297 ~ 40861180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944668
ATGgttgccatcttgaagcatgtgaggaCAGCAGACTGCGATAGGGAGCATGTCCTTAAATACAccaaccagctggtctgcgcatgctctgaggatgtggctAGGGATGTTGTCTTGGCCAGAGTCCTTGCGAggattaacatgtttaaatgttttacccaCATCgtccatggagaaggagaggtgggcccacagtccttggtagcaggcCGCGTCAGTGGCAcggtggcgacataCATCGCTGCGTGCCTTGCAGATATCTCATCTTGAATGTCAGCCCACTACCTCAAGCTCAACAAGACGGAACTGCCATTCCTCCTGAGGACGGCCTCTCCATCGAcctctccatcatggttgacAATTCCACAGTGTCaacctcccagagtgcaaagaaccttggcatgaccctggacaacacatGTCATTTTCtgtctgcaaacatcaaagcagtgacccgcTCCTGTAGGTTCTTGCTCTACAACATCTGTAAAgtatgaccctacctcacacaggaagcggcgctggtcctaatccaggcacttgttcTCTCCCGTCGGGACTACTGCAACTTGCTGTTAGCTGGGCTCCAGCGTGCGCCagcaaacccctgcaacttatccagaacatAGCAGCCcacctggttttcaaccttcccatgTTCTCTCAAGTCACCCAGCTCCTCCGCACACTCaactggcttccagttgaagcttgtatccactacaagaccatgttCCTTACCTATGGAACAGCAAGTGTAACTGCCCCTCCATAGCTTCAGGCTATGCGAaaaccctataccccaacccgagcactccattCTTCCACCaagtctcttggccctcccacccctacaggagggcagctcccTCTCAGCCCTTTTCTAATCTGGCACACCAATTGTGGAACCAGTTTCCCCCGAAGCTAGGACAGCaaagtccctgcccatcttctgaaaacatctgaaaccctacctcttcaaacaaCATTTTAAATAA

Function

NR:

description
reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944668 True 998 mRNA 0.52 2 40858297 40861180

Neighbor

gene id symbol gene type direction distance location
dnah7 dnah7 coding upstream 155619 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 405755 40440040 ~ 40452542 (+)
asmtl asmtl coding upstream 1075893 39769763 ~ 39782404 (+)
LOC110519965 LOC106586023 coding upstream 1088871 39745774 ~ 39769426 (+)
LOC110519964 LOC106586025 coding upstream 1116448 39713690 ~ 39741849 (+)
LOC110519971 tmeff2 coding downstream 693291 41554471 ~ 41725755 (+)
LOC110519972 sdpr coding downstream 878910 41740090 ~ 41767612 (+)
spegb LOC106586064 coding downstream 925773 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 1080919 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 1126075 41987255 ~ 42160686 (+)
G257303 LOC106594194 non-coding upstream 14458 40843610 ~ 40843839 (+)
G257299 NA non-coding upstream 15864 40842211 ~ 40842433 (+)
G257298 NA non-coding upstream 17022 40841041 ~ 40841275 (+)
G257271 NA non-coding upstream 34980 40822911 ~ 40823317 (+)
G257270 NA non-coding upstream 35509 40822578 ~ 40822788 (+)
G257435 NA non-coding downstream 84574 40945754 ~ 40946128 (+)
G257482 NA non-coding downstream 118551 40979731 ~ 40980095 (+)
G257624 NA non-coding downstream 313823 41175003 ~ 41252652 (+)
G257901 NA non-coding downstream 409248 41270428 ~ 41270633 (+)
G258000 NA non-coding downstream 517838 41379018 ~ 41379405 (+)
LOC110519960 LOC106586058 other upstream 1190209 39658753 ~ 39668297 (+)
G254816 NA other upstream 2013741 38843510 ~ 38844556 (+)
G254445 NA other upstream 2257431 38600487 ~ 38600866 (+)
G254204 NA other upstream 2416563 38441166 ~ 38441734 (+)
G261749 NA other downstream 3390889 44252069 ~ 44252551 (+)
G262037 NA other downstream 3659239 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4977741 45838921 ~ 45839480 (+)
G263710 NA other downstream 5072939 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 5214304 46075484 ~ 46079425 (+)

Expression


Co-expression Network