LOC110519965 (LOC106586023)


Basic Information

Item Value
gene id LOC110519965
gene name LOC106586023
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39745774 ~ 39769426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974090.1
CAAGCTCTTGCGGACAGCGTCGTCGCTGAGGCATTGAATAATCGCGGTACTTGGTTTAGAACTCTCGCGAGGGGACATAGTGACTtccacaggagaggaagagggatggagagagatgaggtctGAAAATGACCAAATGCCCGGAGGCAGGGCGAAAATTGTCGTCGAGATACAATTTAGAGACATTCCGAGGGAACAGGACGCCGTCTTTGTCAACTCAAAGCAGAAAGAAGAGAAGAAGGAGGTATTTACTAAGGTAGTAATAAGGCGACTTCCACCCAACCTGTCCAAGGACCAGCTGGAAGAACAGCTCAGTCCTCTTCCATCCTTTGACTACTTTGAGTTCTTCCCTGCAGATCAAAGAGCTTACATCAACTTCAAAAACCCAGAGGACATCCTGCTCTTCAGAGACCGCTTTGATGGCTATGTTTTCATTGATAACAAagGCCAGGAGTACCCAGCTGTGGTAGAGTTTGCACCCTTTCAGAAAGTATCCAAGAAGAAActcaaaaagaaagatgccaaaGCCGGAAGCATTGAAGAAGACCCAGAGTACTGTCGGTTTCTGGAGAACTACTCCTGTGATGAGGAGAAGTCAATGGCCAACCCTGAAACCCTGCTGGGAGAGATAGAGGCCAAGACAAGGGAACTCATAGCCAAAAGAACAACACCTCTTCTGGAGTACATCAAGAATAAGAAACTTGAGAAGCAGAGGataagagaggaaaagagagaggagcgTCGACGCAGGGAGATGGAGAAGAAACgccagagggaggaggagaaaaggaagcggagggaggaggagagacgcaAACGCAAGGAGGCGGATAAACTGAAGAAGCTGTCGGAGAAGGAGATCAAGATAAAGCTCCTAAAGAAGAGTGACCGGGACGATGACATGGACTCTGACAGACTCAAGGACAAAGGGGACAGTGGGGATACGGAGAGGGCCAAGTGGGACAAACCCAGTGGACAAATGAAGTTCAAGGAAGCCAAGGACAAGGGTCAGATGGAGAGCGATAAGGGAGAACACGGCCGCAGGCAGAGAGACAAAGACCACAGAggaagagacgaggagaggaaacGACAGCGCCACCACTATGAGTTTGACAAGTTTATACGGCGCAAGGAGGAGACCAAGTGGGGCAAAGGCTACTGCCAGGACCGGGCCAAGAAAGATGGCCACCACCACGGCTCCTACTCCTACTGCCCCAGTACGGGTGACAAGGTGGGtaaggaggacagggagggcatTGGCGCTAGCAGGAAGGACCGCACCCGGAACAAGGTGAGCGACAAGGcttgtgtctgtcagtctgtgttagcCCATCAGGACAGAGGGACGTCCCAGTCAGAGGGGCCACACCAGATAGGAGGGGCTCTGCCAAACAAGGACCGACCGGCCATGCAGCTCTACCAGCCTGGCACTCGCAAATGCGTGGGCTCAGCGAGCAAAGGTTACGAGCTCCCCATCGGCCAGTCGCCAGAACACGTTGCGGTAGATCACTGCTATGAGGCCATTGCCATGGGAACAGGCTCAGAAAAGAGTAGTGAAGATTAGTCCAGTCCGTAGTCCGCTCTGATAGGCCTTTCACATTCTTTATGCGTATTGGGCTGCCAGATTGTAGGCTTGTGCATTACTAAACAACAAGCATGCGCAAGGCTATGGGGTTGATGGAGCTGCACTCACAGGTCACATCATTTGAACTTTCCGACACTTCTGCATCAAAACCTTTGTGCAAATAATGTGAAAGGCTTGTAAGATTGGCCTGCcctgacaggaggaggagggtaacaAAAAtcaaacattcccagaacataaTGGGAACATTTTCATTGTGTTCCCATTTGGTTGTATACTGTGCATCACAATAGAATGTTCTCTAAGCATGATGGGACTGAAGTTATAGGAAGTTGTTTGTTTCTTGCCTGTGTGTTATTCCCATCTTGGTTCACCCTTGGGTACAATAGCACAATAAGGACCTTCCttaattatgtttttttgtttttttaccctaTATGTACAGTTGTTTCATGACAGGATAGTTAATCCGTGGTGTTTACACGTCTGGAACATTCACTCATTTCAGAAACCACTGCCTGATAACAGTtatttatatatatgttataGTTATATTTTGTATATTCCACATGAGACATTGTGTCATTGTTTTAATGAGAGTGTACCTGAGGCAGCACATTACAAGccagtttcccggacacagattactCAGTCCTGGAATAAAAAAGCATGGTCAACGGAGAAGTTTTCTAGTCCAGGGCTAAAATGTATCTGTGTCCTGTAAATTTCCCCTATGTGTCTGTAACTAAGGAATATCTCAGCAAGTGAGATCATATTTATAAGCCTTTTTAGTGATTCCATTTGACTGGGATGTTTTTCAAAGAAAGTCTATAGATTTTATCACAACGAAAATATATGAAGTAGTGAGAATTATATTTAAGATATTCAAAATGTATTTGCAGTGTTGGATGTAGAACCTTTTAGAATATATTAATCAAATaattgtgtgtgcatatgtgcgtgtgtgtttcagtgttttgcGTGTGtgataggagccagagaggaaAATGTTTAGGTTGTCAACAATATGCTTTGTCAATTGTTCCCTTGTATAATGTGACTTATGACAATTCTTACATCATCGTGTTTCTAGTTGTCATAGACAGTAGCTATTTGTGTTAGGAAACAAGGTGACGTGGACTGTCTTATAAAACAGTATTTCACACTTGAGCCAAGAAGAACAAAATTATTCATCATGGATTTAgagcccagagtttttcctggtcaggttacACGATCAACAAAAACTTCTGCCACTTAAATGTCATGATGAAAAGGAGGCAAAATAACATTAAAGGTGCTGAGTTTGATGCTGTTAAAAGTCTACATTTTCTAAACTGTTTGCACGGTTTTCTACCAAATTGTGAACTGTTGGATTCAGCTGATTCCTGAACTGCAGTATGTTATAGATATGTGTAACATGCCTTAGATATTTTTTGCACATGACAGTAAAATCACATTCTGGTTAAGACACTTTCCttctgtttgttgtttgttttcatgaagagatttgaaaaaaagttaaataaaattatCCAATAGAGGTT
>XM_021596885.2
AAGCTCTTGCGGACAGCGTCGTCGCTGAGGCATTGAATAATCGCGGTACTTGGTTTAGAACTCTCGCGAGGGGACATAGTGACTtccacaggagaggaagagggatggagagagatgaggtctGAAAATGACCAAATGCCCGGAGGCAGGGCGAAAATTGTCGTCGAGATACAATTTAGAGACATTCCGAGGGAACAGGACGCCGTCTTTGTCAACTCAAAGCAGAAAGAAGAGAAGAAGGAGGTATTTACTAAGGTAGTAATAAGGCGACTTCCACCCAACCTGTCCAAGGACCAGCTGGAAGAACAGCTCAGTCCTCTTCCATCCTTTGACTACTTTGAGTTCTTCCCTGCAGATCAAAGCCTCTACCCACACTTGTTCTCCAGAGCTTACATCAACTTCAAAAACCCAGAGGACATCCTGCTCTTCAGAGACCGCTTTGATGGCTATGTTTTCATTGATAACAAagGCCAGGAGTACCCAGCTGTGGTAGAGTTTGCACCCTTTCAGAAAGTATCCAAGAAGAAActcaaaaagaaagatgccaaaGCCGGAAGCATTGAAGAAGACCCAGAGTACTGTCGGTTTCTGGAGAACTACTCCTGTGATGAGGAGAAGTCAATGGCCAACCCTGAAACCCTGCTGGGAGAGATAGAGGCCAAGACAAGGGAACTCATAGCCAAAAGAACAACACCTCTTCTGGAGTACATCAAGAATAAGAAACTTGAGAAGCAGAGGataagagaggaaaagagagaggagcgTCGACGCAGGGAGATGGAGAAGAAACgccagagggaggaggagaaaaggaagcggagggaggaggagagacgcaAACGCAAGGAGGCGGATAAACTGAAGAAGCTGTCGGAGAAGGAGATCAAGATAAAGCTCCTAAAGAAGAGTGACCGGGACGATGACATGGACTCTGACAGACTCAAGGACAAAGGGGACAGTGGGGATACGGAGAGGGCCAAGTGGGACAAACCCAGTGGACAAATGAAGTTCAAGGAAGCCAAGGACAAGGGTCAGATGGAGAGCGATAAGGGAGAACACGGCCGCAGGCAGAGAGACAAAGACCACAGAggaagagacgaggagaggaaacGACAGCGCCACCACTATGAGTTTGACAAGTTTATACGGCGCAAGGAGGAGACCAAGTGGGGCAAAGGCTACTGCCAGGACCGGGCCAAGAAAGATGGCCACCACCACGGCTCCTACTCCTACTGCCCCAGTACGGGTGACAAGGTGGGtaaggaggacagggagggcatTGGCGCTAGCAGGAAGGACCGCACCCGGAACAAGGTGAGCGACAAGGcttgtgtctgtcagtctgtgttagcCCATCAGGACAGAGGGACGTCCCAGTCAGAGGGGCCACACCAGATAGGAGGGGCTCTGCCAAACAAGGACCGACCGGCCATGCAGCTCTACCAGCCTGGCACTCGCAAATGCGTGGGCTCAGCGAGCAAAGGTTACGAGCTCCCCATCGGCCAGTCGCCAGAACACGTTGCGGTAGATCACTGCTATGAGGCCATTGCCATGGGAACAGGCTCAGAAAAGAGTAGTGAAGATTAGTCCAGTCCGTAGTCCGCTCTGATAGGCCTTTCACATTCTTTATGCGTATTGGGCTGCCAGATTGTAGGCTTGTGCATTACTAAACAACAAGCATGCGCAAGGCTATGGGGTTGATGGAGCTGCACTCACAGGTCACATCATTTGAACTTTCCGACACTTCTGCATCAAAACCTTTGTGCAAATAATGTGAAAGGCTTGTAAGATTGGCCTGCcctgacaggaggaggagggtaacaAAAAtcaaacattcccagaacataaTGGGAACATTTTCATTGTGTTCCCATTTGGTTGTATACTGTGCATCACAATAGAATGTTCTCTAAGCATGATGGGACTGAAGTTATAGGAAGTTGTTTGTTTCTTGCCTGTGTGTTATTCCCATCTTGGTTCACCCTTGGGTACAATAGCACAATAAGGACCTTCCttaattatgtttttttgtttttttaccctaTATGTACAGTTGTTTCATGACAGGATAGTTAATCCGTGGTGTTTACACGTCTGGAACATTCACTCATTTCAGAAACCACTGCCTGATAACAGTtatttatatatatgttataGTTATATTTTGTATATTCCACATGAGACATTGTGTCATTGTTTTAATGAGAGTGTACCTGAGGCAGCACATTACAAGccagtttcccggacacagattactCAGTCCTGGAATAAAAAAGCATGGTCAACGGAGAAGTTTTCTAGTCCAGGGCTAAAATGTATCTGTGTCCTGTAAATTTCCCCTATGTGTCTGTAACTAAGGAATATCTCAGCAAGTGAGATCATATTTATAAGCCTTTTTAGTGATTCCATTTGACTGGGATGTTTTTCAAAGAAAGTCTATAGATTTTATCACAACGAAAATATATGAAGTAGTGAGAATTATATTTAAGATATTCAAAATGTATTTGCAGTGTTGGATGTAGAACCTTTTAGAATATATTAATCAAATaattgtgtgtgcatatgtgcgtgtgtgtttcagtgttttgcGTGTGtgataggagccagagaggaaAATGTTTAGGTTGTCAACAATATGCTTTGTCAATTGTTCCCTTGTATAATGTGACTTATGACAATTCTTACATCATCGTGTTTCTAGTTGTCATAGACAGTAGCTATTTGTGTTAGGAAACAAGGTGACGTGGACTGTCTTATAAAACAGTATTTCACACTTGAGCCAAGAAGAACAAAATTATTCATCATGGATTTAgagcccagagtttttcctggtcaggttacACGATCAACAAAAACTTCTGCCACTTAAATGTCATGATGAAAAGGAGGCAAAATAACATTAAAGGTGCTGAGTTTGATGCTGTTAAAAGTCTACATTTTCTAAACTGTTTGCACGGTTTTCTACCAAATTGTGAACTGTTGGATTCAGCTGATTCCTGAACTGCAGTATGTTATAGATATGTGTAACATGCCTTAGATATTTTTTGCACATGACAGTAAAATCACATTCTGGTTAAGACACTTTCCttctgtttgttgtttgttttcatgaagagatttgaaaaaaagttaaataaaattatCCAATAGAGGTT
>XM_021596886.2
GCTCTTGCGGACAGCGTCGTCGCTGAGGCATTGAATAATCGCGGTACTTGGTTTAGAACTCTCGCGAGGGGACATAGTGACTtccacaggagaggaagagggatggagagagatgaggtctGAAAATGACCAAATGCCCGGAGGCAGGGCGAAAATTGTCGTCGAGATACAATTTAGAGACATTCCGAGGGAACAGGACGCCGTCTTTGTCAACTCAAAGCAGAAAGAAGAGAAGAAGGAGGTATTTACTAAGGTAGTAATAAGGCGACTTCCACCCAACCTGTCCAAGGACCAGCTGGAAGAACAGCTCAGTCCTCTTCCATCCTTTGACTACTTTGAGTTCTTCCCTGCAGATCAAAGCCTCTACCCACACTTGTTCTCCAGAGCTTACATCAACTTCAAAAACCCAGAGGACATCCTGCTCTTCAGAGACCGCTTTGATGGCTATGTTTTCATTGATAACAAagGCCAGGAGTACCCAGCTGTGGTAGAGTTTGCACCCTTTCAGAAAGTATCCAAGAAGAAActcaaaaagaaagatgccaaaGCCGGAAGCATTGAAGAAGACCCAGAGTACTGTCGGTTTCTGGAGAACTACTCCTGTGATGAGGAGAAGTCAATGGCCAACCCTGAAACCCTGCTGGGAGAGATAGAGGCCAAGACAAGGGAACTCATAGCCAAAAGAACAACACCTCTTCTGGAGTACATCAAGAATAAGAAACTTGAGAAGCAGAGGataagagaggaaaagagagaggagcgTCGACGCAGGGAGATGGAGAAGAAACgccagagggaggaggagaaaaggaagcggagggaggaggagagacgcaAACGCAAGGAGGCGGATAAACTGAAGAAGCTGTCGGAGAAGGAGATCAAGATAAAGCTCCTAAAGAAGAGTGACCGGGACGATGACATGGACTCTGACAGACTCAAGGACAAAGGGGACAGTGGGGATACGGAGAGGGCCAAGTGGGACAAACCCAGTGGACAAATGAAGTTCAAGGAAGCCAAGGACAAGGGTCAGATGGAGAGCGATAAGGGAGAACACGGCCGCAGGCAGAGAGACAAAGACCACAGAggaagagacgaggagaggaaacGACAGCGCCACCACTATGAGTTTGACAAGTTTATACGGCGCAAGGAGGAGACCAAGTGGGGCAAAGGCTACTGCCAGGACCGGGCCAAGAAAGATGGCCACCACCACGGCTCCTACTCCTACTGCCCCAGTACGGGTGACAAGGTGGGtaaggaggacagggagggcatTGGCGCTAGCAGGAAGGACCGCACCCGGAACAAGGTGAGCGACAAGtctgtgttagcCCATCAGGACAGAGGGACGTCCCAGTCAGAGGGGCCACACCAGATAGGAGGGGCTCTGCCAAACAAGGACCGACCGGCCATGCAGCTCTACCAGCCTGGCACTCGCAAATGCGTGGGCTCAGCGAGCAAAGGTTACGAGCTCCCCATCGGCCAGTCGCCAGAACACGTTGCGGTAGATCACTGCTATGAGGCCATTGCCATGGGAACAGGCTCAGAAAAGAGTAGTGAAGATTAGTCCAGTCCGTAGTCCGCTCTGATAGGCCTTTCACATTCTTTATGCGTATTGGGCTGCCAGATTGTAGGCTTGTGCATTACTAAACAACAAGCATGCGCAAGGCTATGGGGTTGATGGAGCTGCACTCACAGGTCACATCATTTGAACTTTCCGACACTTCTGCATCAAAACCTTTGTGCAAATAATGTGAAAGGCTTGTAAGATTGGCCTGCcctgacaggaggaggagggtaacaAAAAtcaaacattcccagaacataaTGGGAACATTTTCATTGTGTTCCCATTTGGTTGTATACTGTGCATCACAATAGAATGTTCTCTAAGCATGATGGGACTGAAGTTATAGGAAGTTGTTTGTTTCTTGCCTGTGTGTTATTCCCATCTTGGTTCACCCTTGGGTACAATAGCACAATAAGGACCTTCCttaattatgtttttttgtttttttaccctaTATGTACAGTTGTTTCATGACAGGATAGTTAATCCGTGGTGTTTACACGTCTGGAACATTCACTCATTTCAGAAACCACTGCCTGATAACAGTtatttatatatatgttataGTTATATTTTGTATATTCCACATGAGACATTGTGTCATTGTTTTAATGAGAGTGTACCTGAGGCAGCACATTACAAGccagtttcccggacacagattactCAGTCCTGGAATAAAAAAGCATGGTCAACGGAGAAGTTTTCTAGTCCAGGGCTAAAATGTATCTGTGTCCTGTAAATTTCCCCTATGTGTCTGTAACTAAGGAATATCTCAGCAAGTGAGATCATATTTATAAGCCTTTTTAGTGATTCCATTTGACTGGGATGTTTTTCAAAGAAAGTCTATAGATTTTATCACAACGAAAATATATGAAGTAGTGAGAATTATATTTAAGATATTCAAAATGTATTTGCAGTGTTGGATGTAGAACCTTTTAGAATATATTAATCAAATaattgtgtgtgcatatgtgcgtgtgtgtttcagtgttttgcGTGTGtgataggagccagagaggaaAATGTTTAGGTTGTCAACAATATGCTTTGTCAATTGTTCCCTTGTATAATGTGACTTATGACAATTCTTACATCATCGTGTTTCTAGTTGTCATAGACAGTAGCTATTTGTGTTAGGAAACAAGGTGACGTGGACTGTCTTATAAAACAGTATTTCACACTTGAGCCAAGAAGAACAAAATTATTCATCATGGATTTAgagcccagagtttttcctggtcaggttacACGATCAACAAAAACTTCTGCCACTTAAATGTCATGATGAAAAGGAGGCAAAATAACATTAAAGGTGCTGAGTTTGATGCTGTTAAAAGTCTACATTTTCTAAACTGTTTGCACGGTTTTCTACCAAATTGTGAACTGTTGGATTCAGCTGATTCCTGAACTGCAGTATGTTATAGATATGTGTAACATGCCTTAGATATTTTTTGCACATGACAGTAAAATCACATTCTGGTTAAGACACTTTCCttctgtttgttgtttgttttcatgaagagatttgaaaaaaagttaaataaaattatCCAATAGAGGTT

Function

NR:

description
regulator of nonsense transcripts 3A-like isoform X2

GO: NA

KEGG:

id description
K14328 UPF3, RENT3; regulator of nonsense transcripts 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974090.1 False 3132 mRNA 0.44 11 39745774 39769426
XM_021596885.2 False 3155 mRNA 0.44 11 39745775 39769426
XM_021596886.2 True 3138 mRNA 0.44 11 39745777 39769426

Neighbor

gene id symbol gene type direction distance location
LOC110519964 LOC106586025 coding upstream 3925 39713690 ~ 39741849 (+)
LOC110519963 LOC106586016 coding upstream 36109 39706441 ~ 39709665 (+)
LOC110519960 LOC106586058 coding upstream 77477 39658753 ~ 39668297 (+)
LOC110519956 LOC105026395 coding upstream 124696 39608169 ~ 39621078 (+)
trnaf-gaa NA coding upstream 352061 39393641 ~ 39393713 (+)
asmtl asmtl coding downstream 337 39769763 ~ 39782404 (+)
LOC110519969 LOC106586020 coding downstream 670614 40440040 ~ 40452542 (+)
dnah7 dnah7 coding downstream 691735 40461161 ~ 40702678 (+)
LOC118944668 NA coding downstream 1088871 40858297 ~ 40861180 (+)
LOC110519971 tmeff2 coding downstream 1785045 41554471 ~ 41725755 (+)
G255357 NA non-coding upstream 74248 39671307 ~ 39671526 (+)
G255355 NA non-coding upstream 75041 39670104 ~ 39670733 (+)
G255349 NA non-coding upstream 91271 39654256 ~ 39654503 (+)
G255348 NA non-coding upstream 92315 39653188 ~ 39653459 (+)
G255346 NA non-coding upstream 96873 39647819 ~ 39648901 (+)
G255407 NA non-coding downstream 17577 39787003 ~ 39787277 (+)
G255433 NA non-coding downstream 48914 39818340 ~ 39818548 (+)
G255434 NA non-coding downstream 50194 39819620 ~ 39819944 (+)
G255442 NA non-coding downstream 58394 39827820 ~ 39828046 (+)
G255444 NA non-coding downstream 60171 39829597 ~ 39829905 (+)
G254816 NA other upstream 901218 38843510 ~ 38844556 (+)
G254445 NA other upstream 1144908 38600487 ~ 38600866 (+)
G254204 NA other upstream 1304040 38441166 ~ 38441734 (+)
G253834 LOC100136012 other upstream 1653040 38092322 ~ 38092734 (+)
G261749 NA other downstream 4482643 44252069 ~ 44252551 (+)
G262037 NA other downstream 4750993 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 6069495 45838921 ~ 45839480 (+)
G263710 NA other downstream 6164693 45934119 ~ 45934418 (+)

Expression


Co-expression Network