RNA id: XM_021596886.2


Basic Information

Item Value
RNA id XM_021596886.2
length 3138
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110519965
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39745774 ~ 39769426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTTGCGGACAGCGTCGTCGCTGAGGCATTGAATAATCGCGGTACTTGGTTTAGAACTCTCGCGAGGGGACATAGTGACTtccacaggagaggaagagggatggagagagatgaggtctGAAAATGACCAAATGCCCGGAGGCAGGGCGAAAATTGTCGTCGAGATACAATTTAGAGACATTCCGAGGGAACAGGACGCCGTCTTTGTCAACTCAAAGCAGAAAGAAGAGAAGAAGGAGGTATTTACTAAGGTAGTAATAAGGCGACTTCCACCCAACCTGTCCAAGGACCAGCTGGAAGAACAGCTCAGTCCTCTTCCATCCTTTGACTACTTTGAGTTCTTCCCTGCAGATCAAAGCCTCTACCCACACTTGTTCTCCAGAGCTTACATCAACTTCAAAAACCCAGAGGACATCCTGCTCTTCAGAGACCGCTTTGATGGCTATGTTTTCATTGATAACAAagGCCAGGAGTACCCAGCTGTGGTAGAGTTTGCACCCTTTCAGAAAGTATCCAAGAAGAAActcaaaaagaaagatgccaaaGCCGGAAGCATTGAAGAAGACCCAGAGTACTGTCGGTTTCTGGAGAACTACTCCTGTGATGAGGAGAAGTCAATGGCCAACCCTGAAACCCTGCTGGGAGAGATAGAGGCCAAGACAAGGGAACTCATAGCCAAAAGAACAACACCTCTTCTGGAGTACATCAAGAATAAGAAACTTGAGAAGCAGAGGataagagaggaaaagagagaggagcgTCGACGCAGGGAGATGGAGAAGAAACgccagagggaggaggagaaaaggaagcggagggaggaggagagacgcaAACGCAAGGAGGCGGATAAACTGAAGAAGCTGTCGGAGAAGGAGATCAAGATAAAGCTCCTAAAGAAGAGTGACCGGGACGATGACATGGACTCTGACAGACTCAAGGACAAAGGGGACAGTGGGGATACGGAGAGGGCCAAGTGGGACAAACCCAGTGGACAAATGAAGTTCAAGGAAGCCAAGGACAAGGGTCAGATGGAGAGCGATAAGGGAGAACACGGCCGCAGGCAGAGAGACAAAGACCACAGAggaagagacgaggagaggaaacGACAGCGCCACCACTATGAGTTTGACAAGTTTATACGGCGCAAGGAGGAGACCAAGTGGGGCAAAGGCTACTGCCAGGACCGGGCCAAGAAAGATGGCCACCACCACGGCTCCTACTCCTACTGCCCCAGTACGGGTGACAAGGTGGGtaaggaggacagggagggcatTGGCGCTAGCAGGAAGGACCGCACCCGGAACAAGGTGAGCGACAAGtctgtgttagcCCATCAGGACAGAGGGACGTCCCAGTCAGAGGGGCCACACCAGATAGGAGGGGCTCTGCCAAACAAGGACCGACCGGCCATGCAGCTCTACCAGCCTGGCACTCGCAAATGCGTGGGCTCAGCGAGCAAAGGTTACGAGCTCCCCATCGGCCAGTCGCCAGAACACGTTGCGGTAGATCACTGCTATGAGGCCATTGCCATGGGAACAGGCTCAGAAAAGAGTAGTGAAGATTAGTCCAGTCCGTAGTCCGCTCTGATAGGCCTTTCACATTCTTTATGCGTATTGGGCTGCCAGATTGTAGGCTTGTGCATTACTAAACAACAAGCATGCGCAAGGCTATGGGGTTGATGGAGCTGCACTCACAGGTCACATCATTTGAACTTTCCGACACTTCTGCATCAAAACCTTTGTGCAAATAATGTGAAAGGCTTGTAAGATTGGCCTGCcctgacaggaggaggagggtaacaAAAAtcaaacattcccagaacataaTGGGAACATTTTCATTGTGTTCCCATTTGGTTGTATACTGTGCATCACAATAGAATGTTCTCTAAGCATGATGGGACTGAAGTTATAGGAAGTTGTTTGTTTCTTGCCTGTGTGTTATTCCCATCTTGGTTCACCCTTGGGTACAATAGCACAATAAGGACCTTCCttaattatgtttttttgtttttttaccctaTATGTACAGTTGTTTCATGACAGGATAGTTAATCCGTGGTGTTTACACGTCTGGAACATTCACTCATTTCAGAAACCACTGCCTGATAACAGTtatttatatatatgttataGTTATATTTTGTATATTCCACATGAGACATTGTGTCATTGTTTTAATGAGAGTGTACCTGAGGCAGCACATTACAAGccagtttcccggacacagattactCAGTCCTGGAATAAAAAAGCATGGTCAACGGAGAAGTTTTCTAGTCCAGGGCTAAAATGTATCTGTGTCCTGTAAATTTCCCCTATGTGTCTGTAACTAAGGAATATCTCAGCAAGTGAGATCATATTTATAAGCCTTTTTAGTGATTCCATTTGACTGGGATGTTTTTCAAAGAAAGTCTATAGATTTTATCACAACGAAAATATATGAAGTAGTGAGAATTATATTTAAGATATTCAAAATGTATTTGCAGTGTTGGATGTAGAACCTTTTAGAATATATTAATCAAATaattgtgtgtgcatatgtgcgtgtgtgtttcagtgttttgcGTGTGtgataggagccagagaggaaAATGTTTAGGTTGTCAACAATATGCTTTGTCAATTGTTCCCTTGTATAATGTGACTTATGACAATTCTTACATCATCGTGTTTCTAGTTGTCATAGACAGTAGCTATTTGTGTTAGGAAACAAGGTGACGTGGACTGTCTTATAAAACAGTATTTCACACTTGAGCCAAGAAGAACAAAATTATTCATCATGGATTTAgagcccagagtttttcctggtcaggttacACGATCAACAAAAACTTCTGCCACTTAAATGTCATGATGAAAAGGAGGCAAAATAACATTAAAGGTGCTGAGTTTGATGCTGTTAAAAGTCTACATTTTCTAAACTGTTTGCACGGTTTTCTACCAAATTGTGAACTGTTGGATTCAGCTGATTCCTGAACTGCAGTATGTTATAGATATGTGTAACATGCCTTAGATATTTTTTGCACATGACAGTAAAATCACATTCTGGTTAAGACACTTTCCttctgtttgttgtttgttttcatgaagagatttgaaaaaaagttaaataaaattatCCAATAGAGGTT

Function

GO: NA

KEGG:

id description
K14328 UPF3, RENT3; regulator of nonsense transcripts 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290927 lncRNA upstream 74251 39671307 ~ 39671526 (+) True G255357
TU290925 lncRNA upstream 75044 39670104 ~ 39670733 (+) True G255355
TU290919 lncRNA upstream 91274 39654256 ~ 39654503 (+) True G255349
TU290918 lncRNA upstream 92318 39653188 ~ 39653459 (+) True G255348
TU290916 lncRNA upstream 96876 39647819 ~ 39648901 (+) True G255346
TU290998 lncRNA downstream 17577 39787003 ~ 39787277 (+) True G255407
TU291027 lncRNA downstream 48914 39818340 ~ 39818548 (+) True G255433
TU291028 lncRNA downstream 50194 39819620 ~ 39819944 (+) True G255434
TU291036 lncRNA downstream 58394 39827820 ~ 39828046 (+) True G255442
TU291038 lncRNA downstream 60171 39829597 ~ 39829905 (+) True G255444
XM_036974082.1 mRNA upstream 3928 39715224 ~ 39741849 (+) False LOC110519964
XM_021596887.2 mRNA downstream 337 39769763 ~ 39782404 (+) False asmtl
XM_036974091.1 mRNA downstream 337 39769763 ~ 39782404 (+) False asmtl
XM_036974092.1 mRNA downstream 363 39769789 ~ 39782404 (+) False asmtl
XM_036974093.1 mRNA downstream 405 39769831 ~ 39782404 (+) True asmtl
XM_021596895.2 mRNA downstream 670614 40440040 ~ 40452542 (+) False LOC110519969
TU290915 other upstream 77689 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 901221 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1144911 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1304043 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1653043 38092322 ~ 38092734 (+) True G253834
TU292451 other downstream 670643 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 670643 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4482643 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4750993 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 6069495 45838921 ~ 45839480 (+) True G263547

Expression Profile