RNA id: XM_036974092.1


Basic Information

Item Value
RNA id XM_036974092.1
length 3445
RNA type mRNA
GC content 0.48
exon number 16
gene id asmtl
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39769763 ~ 39782404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACACGCAAAAAGGCTGAATCTCTCGATTCTACTTCCGCTATGCTTGCGCATGCGTTGTCTCTTGTAAGCGCAACAAGGAATTCATTCGCATGGAAGATCTGCAGAACGATCGTCGGGGCTGTCAACAAAGCTACACCAGCCAGAAGATAATATTGCCAATAGTGAGGAGGTCACCATGGTGTTGATGAATCCTGTCATTTCCAAGCTGACCGGTAAGCTGGTCGTCCTGGCTAGTGCATCTCCAAGGAGGCTGGAGATACTCACCAATGTGGGTTTACGATTTGAGGTTGTCCCATCCTGGTTCAAGGAAACGTTAGACAAGAGGCTGTTCAAAACACCCCATGAGTATGCTGTGGAGACTGCCAAGCAGAAGGCCCTGGAGGTGGCCAAGAGGATGCCGTTTAAACACCTGAAAACTCCAGACATTGTGATCGGAGCAGACACTGTTGTTACAGTGGATGGACTGATTCTTGAGAAGCCAGTGGACAAGCAAGATGCCTACCGAATGCTTTCAAGGTTGAGTGGTaaagaacacagtgtttttaccgGAGTGGCGATCATTCTCTGCCATGAGAAAGAAGATGAAGAGATTGATTATCAAGTTATTGACTTCTatgaggagaccaaggtgaaGTTTGCAGATCTGTCTGATGATTTACTCTGGGAGTACATCAATAGCGGAGAACCCATacgtgtgtgtttgttgtgtctcTGTTTGTGTATGCATGGATCTgggtctctctgtatgtgtgtgtgtgacagggacaAGGCTGGTGGCTATGGTATCCAGGCTCTGGGTGGTATGCTGGTGGAGTATGTACACGGAGACTTCCTGAATGTGGTGGGCTTCCCGCTCAACCAGTTCTGCAAGAAGCTGGGTCTCATCTTCAGCCCCCCAGGCAGTCTGACACACAACAGCACCCAGACCAGCCCCCAAGGCAGCCCTGTCGACACGGTCCCACCAGCCGAGCCAGCCGCCAGCAGCCCAACCCATAACGGCCCTCCGGACAGCCAAGGACAAAACATCCCTTCAGCCAGTACAGCCCATAATgTGAAACAGGAGGAGAGTGGGTGTGGAGAGGGCGAGGTGCCCTGGACGTTGGTCAACAACCTGTCTAAGTGCTCTGCGAACGGGGAGGCTGAGCCCCAGGGCATCAGCGACCCTGCAGCACCAGACTTGACCAGCAGGGGCACCATTCAGATGCAGAATGTGAGGGAGCACGAGACAGAAGACGGCAAGGAAAAGTTGAGCAAGATGATCGAGCTCATGGATGGATTTAAAGCCTCAAAGGTGTTGTTCACAGCATCCAAGCTGCGTGTGTTTGACGTGTTAAGGAGCAGTAAGAAAGGGGAGCTGCAGGCTGAGGATGTGGCCCAGGAGATCAAAGCATCTATTAAGGGGACCGAACGCCTGCTGGAGGCCTGCGTCTCTCTGGGACTCCTGCAAAGAACGGGAAAAGAGTACACAAACACAGCGATGTCCAGGCATTTCCTGCTGTCGGACGGTCCCCTCTCTCTGCAGGGGTACATCCAGCATTGTAACGAACTGGTGTGGCCTCTCTTCACCCACCTGGAGACTGCTGTGAGGGAGGGTACCAACCAGCACGAGAAGGCCTTCGGGAAAACCTCTAACCTTTTCCAGGATGCCTACTACAGCAGACATGAAGTGAAGCTGCGATTCATGAAGGCCATGCACAGCATCGCAAAGGTTTCTGGTAGAGACGTGGCGACGGCCTTTGACCTCTCCAAATATAAGACGGCCTGTGACCTGGGAGGCTGCACTGGGGCCATGGCGTATGAGTTTGCCAAAGCACACCCGGGGTTGTCTGTGACCATGTTCGACTTACCCGAAGTCATTGAGATGAGCAGTCACTTCCGGCCACATGACGCAGATGACAGAGTATCGTTTGTAGCAGGAGATTTCTTCAAAGATGAGCTTCCCAAGGCAGACGTATACATATTGGCAAGAATTCTCCACGACTGGTCGGATGAGAAAGTACACATTTTGCTGAGTAAAATTGCGAAAGCATGCAATCCTGGCTGCTGCGTGCTGGTGAGTGAGATCTTTTTGGATGAGGACAGGAAGGGGCCGAGCAGAGGCCTACTTCAGGCCCTCAGTTTGACCGAGGGGAGACAAAGGAGCGCCTCCGAATACAGTCTCCTACTGAAGAGCCACGGCTTCACCGCAGCAcaagtcaaacacacacacaacctcctggATGCCATCCTGTGTGTCACTGAGTGACTTGGAGACAAACAACCTTGAAACCAATAAAGAATATAAATCAATTAAATGCCTCCCCAGTCTAGAATCAAGCTCTTGCCCCAACCAATAGACACTGAGGCCCTGTTTTTAAATACTAAAGGTTTACTGATCGCAAACTGCTTACAGCCATCCTGTCATGTCAGATCAACGATTACTTCAAGAAAGGTAGGAAGGAAGGACTCTTTTTAGAACTGTTCAAACAGGGCCTCACTCCATATTACTTTTACCCATCCATTTCATGTTGATCTTCAAAGGGGTCAGGAAATGTTGGGGAAATGGGGCTAGGGGTTTATTTTGGATGATAGATTCTGTGACTACGGAGCCGCCACCTCCCTTGGCTGTGAGACATGTTACTGTTCCCCACAATGACCAAGACAGTTTAATTTGACTTTTAATTCATTATAAAAATGGACCACAATGTTGTGAATTTCAATGGACCACACTGACGGCATTTCTTTCAAACACTGCAATATAGACTATCAGAGGTATGTCTATGCAGCTGACTTTGATCTCACAGTAATCCTTGAAGTCTCTGTCATTAAGCcagccaggtcacctgtgataTAAGTCAGTATTCGATGTCCGTCCATTTCTGAGGACGCagggagatgatgtggaaaccggccactggtggcaacagtgagtgcctttaccttcaagtaggttttggtagGCCAGGGTTTCCccaactcggtcctcgggaccgagttttgccctagcactacacagctgactcaaataataaactaatcatcaagctttgatcattttaATCTGCTGTccagaggaccgagtttgggaaacgctgtacTAAGGGTGTTGGGGATGATGGATGAGCGTAAGCCTATCCCGAACCTTAACCATTTGGAgataatgcctgaacttaaccataacaattcagagttaatacctaaactTGACCTTAATCACTTCAAAAAGTTGGAACAACTtctaaatttgacgtttgagaaacatggatgaacttCTAATTCTGAGAGTATGAGAGCTGGTAGCATAAAACTGTCATGACAGCTGATGACCGCAAAGACAACCAACAATAATTAACTGACCGCTTTCCCAACATTTTGAGACCACCACAACACTTCGTTGTTTGCcttttgacaattttcctgtctgAATTGTTTCAataatgaaataaatattttgtctgAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU290927 lncRNA upstream 98263 39671307 ~ 39671526 (+) True G255357
TU290925 lncRNA upstream 99056 39670104 ~ 39670733 (+) True G255355
TU290919 lncRNA upstream 115286 39654256 ~ 39654503 (+) True G255349
TU290918 lncRNA upstream 116330 39653188 ~ 39653459 (+) True G255348
TU290916 lncRNA upstream 120888 39647819 ~ 39648901 (+) True G255346
TU290998 lncRNA downstream 4599 39787003 ~ 39787277 (+) True G255407
TU291027 lncRNA downstream 35936 39818340 ~ 39818548 (+) True G255433
TU291028 lncRNA downstream 37216 39819620 ~ 39819944 (+) True G255434
TU291036 lncRNA downstream 45416 39827820 ~ 39828046 (+) True G255442
TU291038 lncRNA downstream 47193 39829597 ~ 39829905 (+) True G255444
XM_036974090.1 mRNA upstream 363 39745774 ~ 39769426 (+) False LOC110519965
XM_021596885.2 mRNA upstream 363 39745775 ~ 39769426 (+) False LOC110519965
XM_021596886.2 mRNA upstream 363 39745777 ~ 39769426 (+) True LOC110519965
XM_036974083.1 mRNA upstream 27940 39716063 ~ 39741849 (+) False LOC110519964
XM_021596895.2 mRNA downstream 657636 40440040 ~ 40452542 (+) False LOC110519969
XM_021596896.2 mRNA downstream 657636 40440040 ~ 40452542 (+) False LOC110519969
XM_021596897.2 mRNA downstream 678757 40461161 ~ 40701455 (+) False dnah7
XM_036974097.1 mRNA downstream 678757 40461161 ~ 40702678 (+) True dnah7
LOC118944668 mRNA downstream 1075893 40858297 ~ 40861180 (+) True LOC118944668
TU290915 other upstream 101701 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 925233 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1168923 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1328055 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1677055 38092322 ~ 38092734 (+) True G253834
TU292451 other downstream 657665 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 657665 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4469665 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4738015 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 6056517 45838921 ~ 45839480 (+) True G263547

Expression Profile