G257303 (LOC106594194)


Basic Information

Item Value
gene id G257303
gene name LOC106594194
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 40843610 ~ 40843839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU293061
AGGATTGCCACCGCACATGTCGTTCGACCTACTGTTACGAAAAACACAAAATTGAAACATGGCACCCCAAGGCCTGTAAATCTGTAAGCAGTTGTGACATTAACAAGAAATGCCCAAAATGCAGTTGCAATTACAACCTTAAAATAGATAGCCCTAAACCGCATGTGTGTGGAATCATACATTGTCCAATCTGTAAATGGCCTTTGAAAAGCAGAGACGCTGAAGTGGTT

Function

NR:

description
uncharacterized protein LOC110496801

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293061 True 230 lncRNA 0.42 1 40843610 40843839

Neighbor

gene id symbol gene type direction distance location
dnah7 dnah7 coding upstream 140932 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 391068 40440040 ~ 40452542 (+)
asmtl asmtl coding upstream 1061206 39769763 ~ 39782404 (+)
LOC110519965 LOC106586023 coding upstream 1074184 39745774 ~ 39769426 (+)
LOC110519964 LOC106586025 coding upstream 1101761 39713690 ~ 39741849 (+)
LOC118944668 NA coding downstream 14458 40858297 ~ 40861180 (+)
LOC110519971 tmeff2 coding downstream 710632 41554471 ~ 41725755 (+)
LOC110519972 sdpr coding downstream 896251 41740090 ~ 41767612 (+)
spegb LOC106586064 coding downstream 943114 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 1098260 41922501 ~ 41965278 (+)
G257299 NA non-coding upstream 1177 40842211 ~ 40842433 (+)
G257298 NA non-coding upstream 2335 40841041 ~ 40841275 (+)
G257271 NA non-coding upstream 20293 40822911 ~ 40823317 (+)
G257270 NA non-coding upstream 20822 40822578 ~ 40822788 (+)
G257269 NA non-coding upstream 21140 40821701 ~ 40822470 (+)
G257435 NA non-coding downstream 101915 40945754 ~ 40946128 (+)
G257482 NA non-coding downstream 135892 40979731 ~ 40980095 (+)
G257624 NA non-coding downstream 331164 41175003 ~ 41252652 (+)
G257901 NA non-coding downstream 426589 41270428 ~ 41270633 (+)
G258000 NA non-coding downstream 535179 41379018 ~ 41379405 (+)
LOC110519960 LOC106586058 other upstream 1175522 39658753 ~ 39668297 (+)
G254816 NA other upstream 1999054 38843510 ~ 38844556 (+)
G254445 NA other upstream 2242744 38600487 ~ 38600866 (+)
G254204 NA other upstream 2401876 38441166 ~ 38441734 (+)
G261749 NA other downstream 3408230 44252069 ~ 44252551 (+)
G262037 NA other downstream 3676580 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4995082 45838921 ~ 45839480 (+)
G263710 NA other downstream 5090280 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 5231645 46075484 ~ 46079425 (+)

Expression


Co-expression Network