G257624


Basic Information

Item Value
gene id G257624
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41175003 ~ 41252652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU293390
agcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaggggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgttgttccacttcatgattgtgtcccac
>TU293391
agcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaggggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaggcactgtacatgcaagCATACACACAGCACGTTTTCCACTCaatgactttcacattcttgttctgaagcgaTTGCAGTGTTGCTTTGGTTGTATGCATGTCTaatcaaatccaatgttatttgtcacatacacatggttagcagatgttattgtgagtgtagcaaaatacttgtgcttctaattccgacaatgcagtaatctaacctaacaattccacaactactaccttatacacacaagtgtaaagggatagcgaatatgtacataaagatatatgaatgagtgatggtacagaacggcataggcaagatgcggtagatggtatagagtacagtatatacatgagatg
>TU293393
ctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaacatctacaatggaatggttcaaaaataaacatatccaggtgttagaatgaccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacctacagctgtaatcgcagtaaaaggtggcgctacaaagtattaacttaggggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaggcactgtacatgcaagCATACACACAGCACGTTTTCCACTCaatgactttcacattcttgttctgaagcgaTTGCAGTGTTGCTTTGGTTGTATGCATGTCTaatcaaatccaatgttatttgtcacatacacatggttagcagatgttattgtgagtgtagcaaaatacttgtgcttctaattccgacaatgcagtaatctaacctaacaattccacaactactaccttatacacacaagtgtaaagggatagcgaatatgtacataaagatatatgaatgagtgatggtacagaacggcataggcaagatgcggtagatggtatagagtacagtatatacatgagatg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU293390 False 381 lncRNA 0.40 2 41175003 41236423
TU293391 False 805 lncRNA 0.39 3 41175003 41252652
TU293393 True 870 lncRNA 0.39 2 41235979 41252652

Neighbor

gene id symbol gene type direction distance location
LOC118944668 NA coding upstream 313823 40858297 ~ 40861180 (+)
dnah7 dnah7 coding upstream 472325 40461161 ~ 40702678 (+)
LOC110519969 LOC106586020 coding upstream 722461 40440040 ~ 40452542 (+)
asmtl asmtl coding upstream 1392599 39769763 ~ 39782404 (+)
LOC110519965 LOC106586023 coding upstream 1405577 39745774 ~ 39769426 (+)
LOC110519971 tmeff2 coding downstream 301819 41554471 ~ 41725755 (+)
LOC110519972 sdpr coding downstream 487438 41740090 ~ 41767612 (+)
spegb LOC106586064 coding downstream 534301 41786953 ~ 41915322 (+)
LOC110519974 LOC106586063 coding downstream 689447 41922501 ~ 41965278 (+)
LOC110519975 LOC106586062 coding downstream 734603 41987255 ~ 42160686 (+)
G257482 NA non-coding upstream 194908 40979731 ~ 40980095 (+)
G257435 NA non-coding upstream 228875 40945754 ~ 40946128 (+)
G257303 LOC106594194 non-coding upstream 331164 40843610 ~ 40843839 (+)
G257299 NA non-coding upstream 332570 40842211 ~ 40842433 (+)
G257298 NA non-coding upstream 333728 40841041 ~ 40841275 (+)
G257901 NA non-coding downstream 17776 41270428 ~ 41270633 (+)
G258000 NA non-coding downstream 126366 41379018 ~ 41379405 (+)
G258303 NA non-coding downstream 379287 41631939 ~ 41703505 (+)
G258228 NA non-coding downstream 473130 41725782 ~ 41726046 (+)
G258395 NA non-coding downstream 526047 41778699 ~ 41778904 (+)
LOC110519960 LOC106586058 other upstream 1506915 39658753 ~ 39668297 (+)
G254816 NA other upstream 2330447 38843510 ~ 38844556 (+)
G254445 NA other upstream 2574137 38600487 ~ 38600866 (+)
G254204 NA other upstream 2733269 38441166 ~ 38441734 (+)
G261749 NA other downstream 2999417 44252069 ~ 44252551 (+)
G262037 NA other downstream 3267767 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 4586269 45838921 ~ 45839480 (+)
G263710 NA other downstream 4681467 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 4822832 46075484 ~ 46079425 (+)

Expression


Co-expression Network