RNA id: XM_021596901.2


Basic Information

Item Value
RNA id XM_021596901.2
length 4528
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110519972
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41740090 ~ 41767612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAATCCTTCTTCCCTTCTCAGTCCTTCTCTggagcaacaacaacaacgtcAACTAACTGACAGAGACTCTTCACATCTCAGAACAAGTCTGTCCACATTTCCCTCCACTTCTAGCCCTCTAACTTACTTAAACCCTTCAAAAGAGGACATTTAACCCCACCACTCTGTGGCCATGGGAGAAGACTCATCGCACGCCGAgcgcagcagcaacagcagcagcatttTGGTCAACCCCCAGCAGTACCAGGCACAGCAAGACAACATGGACCTCCTGGTGTCCAGCTTCAGCCCGAGCCCAGCTCCCTCGTCCCCCACCAACACCCTCTCCAGGCTGGGCTTGAAAACCCCTGGGAGCCTCGGACCTGGAAGTCCCACCAGTCCCACTGCCAGGGACCAGGTGAGCGCCATCACAGTGGTGGCTCTACTCGACAAGCTGGTCAACATGCTGGAGGCAGTGCAGGAGAACCAGCAGCGCATGGAGTTGCGTCAGGCCGACCTGGAGGGAGCCGTACGAGGGGTCCAGGGTGACGTGACCCGCCTTTCCAAGAACCACACCAGCACATCCAACAGCGTTAACAAGCTGCTAGAGCGCTCACACAAGGTCAACACCCACATGAAGGAGGTGAGGGAGCGGCTGGACAAGCAGGCGTCACAGGTGAAGCGGCTGGAGGCCAACCATGGACACCTGCTAAAGAGGAACCACTTCAAAGTTCTCATCTTccagGAAGACAATGAGATCCCCTCCAGCGTGTTCATCAAGGACTCCCCCAAGACCCCCCAGGCCAGCCAGCTGGAGGACAACGCTCTTGCGGCGCCTGCCCCGTCCGTCGCCGGCACAGACGCCAACCGCTCCCAGGAGGAGGGTCTCCATACCATCAGCTTGTCCTCCTCCGACGATGATGCTGGGGGTCACCAGGAGGAAGACGAAGCCCTGGAGGAAGAGGCAACGCTGGGTCTGGGAGCAACCCGGCCCTCCGTTGAGAGATCCAGAGCAGACCGGCTGAAGCGCTCCAGTCTGAAGAAGGTGGACAGCCTGAAGAAGGCTTTCTCACGCCAGAGCATCGAGAAAAAGATGAGCAAGATCAGCACCAAGATTGTGCCGACAGCGAGCCGCGAGAAGATCAAGAAGAGCTTCACACCAAACCACCCAAAGAGCCCTGCCTCCAAGAGTTCCTCATTCAAGGTGTCGCCAATGACGTTCAATGTGAAGAAGATGCGTGGTGAAGGGGAGGACTCAACCCAGCCCGGAGGCTCGCCTAGCGGGCATGCCCACGTGGATATCCCTCCCCTGGGAAGCATGGATGGGGATCTGCCCCTGGCCGAGGTGCATTCCCAGGAAGTGCTgggtgtggagggaggagaggagctggCTAGTCCCTCTAGCACTGGGAGCGTAGAGGCCAAGCTGACCTTCAATGGAGAAGCAGGGGGCCTGGAGTGTCACCTGACCACTGATCGTCCGGCGGGGCTCGCTGTCCCGGAGCATGATGATGAtattggagaggaggaagaggaggatgatgaagaggaggagcaggagagccCGGTGGAGGTGAAAGCTCCCATACCTTCTGCTACTGGAATCACTGTGGAGCAAGCCTCTTAATCGCATCCACCTCAACCTTTGCTCCTGCACATTCCCTGCCCTCTTTATATTACCATGCCAACAGTATAGTCATCCCTCCGTCTTTCCTAACCATGTTTCCGAGATATCTCctagacagacacacatgcacacacacgcacgcatgcacacacatggacacacacacacaatgtatatacaCAACATGAAAGACGTGTCCTTAGCAGAACTATTCCTGAAAAAACTCAAGCTCCTGTGCCAGCGATACAGGCCATCCCATCAAGTGATCCTGCATCATTTgctcctgcctggtgtgtttaactaGCTACCCTTCTGTGGGGCTACCTTAAGAAAAGAACCAGTGTGCCAAGAGACTATTACTCACCTTCCCAACTGGAACCTTGCTTCTGTTTCAAGAGAACAGCACATCTCCAGTACACTGAGCcaactatctctctctatttgtctgtctctgcatgggcctctctgtctgtctgacagataGTCTCTTTGTTCCTCTGCCTCGTGTGAATGCCGGTAAATCTCTGGCAAAAAAGGTAAAGCCCCACAGTTTGGGGATGGTAGCTTGTTGCCAGGCAGTCTGGGCATTGGTATGGTTGGTAGCTAGGTTTCTACAGCAAGGGTGGTGTAAGGCTGAAGGGATATAGGGCTGTAATATGTCCAAATGCTCTGCCTGAAAATAGCTTCTTATCTTCATCAAGGATATTTTTATTATTTCAGAGAGCGGGTTCAATGTAAGAAGGGGGATAGGGAGGAAGTACGACGAGAGAAGGAAAGTCGTTTAGAGTGTTCGGATGAGTCAAATACATGTGGCAAATGCGGTGTGCTTCATTTTGCTTATAATAAAACCATTGGAATAGTCCCAAAAAGTGCAAACTCTGCACCTCAGGCATGTGGATGAAGCTGAATCAAGCACACCTcaggtatttgaatgtttgtgaTACATGTATTTGACCCATGTCTTGATGTAACCACACAACCTGAGTGCAGGGTAAAAAAAGAGCCATATAATTGAGGCAGTTTTGTGCCATCCCTACCTTAGTTTATTTGCCTTAATAAATACTCACCAGAACAGAAAAACTGCTTGAAAGTGGTTAATGGTTCACTAGGTACAGACCACACCTTCAATATTTGAGGAGAGTAAGTTGAAATAGCTGTCTTGTGTTAACGTCTACTGGCGTCTACCTTAAGGCTCTACATACTGGGACTTTCCTAAACCACCCTATATCAGGGCAATTCTAATCTTATGTGTATGTACATATTCGATTATGGGATTATCAGTGGGTATAATGATTTATATAGAATCATGTTTGTTGAATACTGTCAAACTTTATCGGGTACTGTCTCCTGAGTATTGTACTTCCATAATATTATAGTCTAACAATGTGGACTTTTGGAGTTGATCACTCACATAAACAAGGTTTGAATAGCATAAACAAGCATAAACAAGCATTTACACATTGTTATATGgttgaaacacacacatgcacacacaaaacaTTAAAGGAAGACTCCACCCAAAatctattttggtatttgtttcattagtccattgttgatatattcccaaaatgctttgcatgtcagcaatcaagttaagatatgtaactttcaaaatacagaaatacagcggGTATGATGATTGGTGGAATTGTCCTTAATAAACTAGCACACATTTACAGAGGCACCCACACAGACATTCACTCACATGCTCCTGCACGCACGGAAGCCTTGAAACTTAGGCCTACACAAGCTGGTGTGAGTAATTGCTGTCCCGGAGCGAGGAATTCCTGCATGTTTTAGAAGATAAGAGTGATAGTGAAAGATTCCATTCCTTTAAATTCTCTCCTTTTGGAATCTACTTGCTCGTATCACTAAGGGAGGATAGTTCATCTAATCTATGTGCAGCACTTGCCACTAACTTGTGGCTACTGTTTATATGGTTTCATATCCATAAGATGGAATGGAATTTAAACCCCTCTGTGGGGAGTATATGCAGTATCAGCCTGAACTTCATGGTTAGCATCCCCTGGCCTATTCCTTTCTGATTACAAGTGCCTTGCAACCAGTCAGTGCCTAGTACACACTTAGGGGCCTCCAAAATATATAGGTGTCTAATGAAATGTAATTAAAAACAGAATGAAACCATTAAGCAGATTATGTATTGTATGTTATTTCTCAGTTGAGAGAGATCttggagaaagggaaagagagaaggagaggcagagcagagaggcATTCCTGGGTTTGACATATGACTCTTTGGCAGCCCATTTTTCATGCACTACCCTCTCTGCCTGGACGTGGCGGCAGGGGGAACTGGGGCCCTCATGGGCCACAGGTGTGTTGCCCCCAGGGAGGCCCCTGGGCACTGGCTCActaggaaggaggggaggaagggagggatgaggATGAGAAGGGTAGATCATTTAGAAAAACATTGTTTTTGGAACTGTGGGAGTAGAACAGAAAATGGGACAGGTTGCATCCCGATTCTCCACACTCAGTGTCATGAATTTAAAAATTGTGAAAACTCCCTCCAGCTAATGCCAACACCAATTCAATTATATGAAATCCATGATTGGAGAATAAGGACCCGTGTTTTGAGAGGAGGTATAAATTGAAGAGAGATATGTCCAATTGTTTGCGCACCGGCATGGCCTTACATTTTTTAACCACAAGCTATATACTCTTTCTATCTATCCATCACAGAGacatctcctctttctctccctgatgctctctcacacaaacgcacacgcacattctctctctccccatttgtCTCACACtcatctttctctcactctcttctaaAAGCGCAGCCCATCTCCAATCaatggtgtgtattcatggatgccaagggaagccaggcttccccccaCACAAAATGTagcaataaaaaaatacaaaatcaaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294010 lncRNA upstream 14044 41725782 ~ 41726046 (+) True G258228
TU294087 lncRNA upstream 36585 41631939 ~ 41703505 (+) True G258303
TU293775 lncRNA upstream 360685 41379018 ~ 41379405 (+) True G258000
TU293674 lncRNA upstream 469457 41270428 ~ 41270633 (+) True G257901
TU293391 lncRNA upstream 487438 41175003 ~ 41252652 (+) False G257624
TU294180 lncRNA downstream 11087 41778699 ~ 41778904 (+) True G258395
TU294181 lncRNA downstream 12563 41780175 ~ 41780484 (+) True G258396
TU294231 lncRNA downstream 77834 41845446 ~ 41845660 (+) True G258443
TU294232 lncRNA downstream 79470 41847082 ~ 41847372 (+) True G258444
TU294233 lncRNA downstream 81119 41848731 ~ 41848991 (+) True G258445
XM_021596899.2 mRNA upstream 14335 41554471 ~ 41725755 (+) True LOC110519971
LOC118944668 mRNA upstream 878910 40858297 ~ 40861180 (+) True LOC118944668
XM_036974097.1 mRNA upstream 1037412 40461161 ~ 40702678 (+) True dnah7
XM_021596897.2 mRNA upstream 1038635 40461161 ~ 40701455 (+) False dnah7
XM_021596895.2 mRNA upstream 1287548 40440040 ~ 40452542 (+) False LOC110519969
XM_021596902.2 mRNA downstream 19341 41786953 ~ 41915322 (+) False spegb
XM_036974099.1 mRNA downstream 74901 41842513 ~ 41915322 (+) True spegb
XM_036974100.1 mRNA downstream 174487 41942099 ~ 41958607 (+) False LOC110519974
XM_021596903.2 mRNA downstream 174487 41942099 ~ 41965238 (+) False LOC110519974
XM_021596904.2 mRNA downstream 174487 41942099 ~ 41965241 (+) False LOC110519974
TU292451 other upstream 1287910 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 1287910 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2072002 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 2895534 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 3139224 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 2484457 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 2752807 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 4071309 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 4166507 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 4307872 46075484 ~ 46079425 (+) True G263733

Expression Profile