RNA id: XM_021596904.2


Basic Information

Item Value
RNA id XM_021596904.2
length 3864
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110519974
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41922501 ~ 41965278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTGTGACCTGTCAAGTCAATGTGTACTCTGCTGATGGTGTCTCAGGCGGGCTGTGGACTGTGAATACCCCCAGCAGTTCAAGCCACCATTACCAAAGGAGCAGTCTGTGAGATGCCAGCCCTCTGGACTGTGTCGCTTCCCTAGAGaaaacaagtctctctctctatgctcggAAAAGTGCAAAACCTCTGAACACTACAAACCTATTCGAGAACGTCAGCTCCCTTTGTGCCTGAAAAGGCACTCTGATCAAAGCACATCTTTTTACACATTTCCCAAAAGCAAGCATGCCTGCTGAACACTGCGAGGTGTCTGAACTAATTGAAACCATGGAATCAAGTGAGCCTTCTGCACAATCTGCTGAACCCTGCATCATTTCGGACAAAATAAATAACTTGTTGGACTATACTGGACACCAGAAGGTCAATGGACAAATGGATCCCGCTGTGCAGATTGTCGATCATTACAGCATGAATGGAGAACATGCAGAAGAGAGCAAACCTTTTGTGCATTATAATGGACATTCAGGGGGGTATGAGCAATGCATCAACAAGCCTTGTGAGGACTATCCTGTTCTCCACAAGCACACTAATCAGTATAAGTCTTCTGAGTTAAGCAAATCATTTGAAGAATGTTCTCAAAATTGTGAGTGCTTTGACTTCAGCAAGTCCTCTGAGCACTATGCTAATGACTGTCTAGCTTCTGTATTTAGCCAACACTGTGAACATTTCACAGAATGCTTCCAGTCATCTGAACAATGCAAGTCTTCTGATCAACACTGTAAGTCCTTTGAGTCAAGCGAACCTGCTGAGAACTCTGAGTTTTTAGCACAATGTAAGATATCTGACTTCATACCTGACATCTCTGAATCCAATGAATCAAAAATATCATTTGAGCACTATACTGGAATttgtgagtattcagaaaaataCAATCATATTGATGACGCAACAGAATATAATGAGACTACAAAGCCAATTGATGAGGATTTAAAGCCCTCTCAGCCAACATTTCAACAAATTGAAATCTGTGGCCTTTTTGACTCTGAGTTTTGCATAATATTAGAACCTATACATTCTTCAGATTTTAACATGCCTTCTCAACACTATGCTGAACAAGATTCTCCCAATGAAAGTATACATGTCTCTGAAGTTCATGAACCTTCTGAGCAAACTCTGCTTGCTGAACAAAGCAATCATCAATCTATTGACTATGATATGCCCTCTGGGCACTGTGAACTGCAAAACACTTTCTATGAGCAAAGAGAGACAAGTGTACAGTGTGAACTCTCTGAGGGATGTAATTATTGTGAGAGCTATCCTTGTCAACATAAAAGCACAAATGACAAATGCTATGAGCCTAGCAGTTCATTTTATTATGAGGAAGACAAGTCTTCTGAGTGCTCATCCATTGAAACAAGGTCTTTTGAATCTTTGATTTATGACAGTATAAATTTAGACCCATTAACTGATTCAGCTGAATTCTATGAagcgttggtggaagaaggagcACAGGACAAATCCAGTTCAGATATATGGGAATCATTTGATAATTGTACAGTTGTGGTAGAATGTGAGGAAAGCAATGCTGATGAAGACAAACCTCACTCGGATGCAGTCGATGGATTCTTTGACTTATTTGATAAAGAGGATACTTACACTTTTGCCCAAAGGCGACCTTATACCTCCTGTTTTGAAGGGGGAGGGGTGCATGAGTTGTTTTTTGAACAACGCAAAACTCATGTGTCCATTATGAATGAGGAAGAAACACAAATGCCCTGCGCCAAAAAAGGGCTTGAAGTTTTTAGTCAAGAAGTGGAGGAAGTTGATGAATCTTATGATGCTTGTGCTGATGATGGACAATTTAATGTAGACTGTGCTGATGATGAGACATCCGCCTCTGGATCCTTTGCAGATGAGGAATCATGTGAATCTTGTTTTGAAGAAGCCACAGCTTATGAAGTTGAGTTTTATGAAGCTTTTGTAGCAGAAGACAATGCTATTGAGGCTGAGGCCTATGAGCCCTTTGTTGAGGATGAGGAACTTTGCATTGCTGAAAATGAAGCTGGTGACGCTCAGGCCAATGGACCCTTAGTTGATGAGGACAACACGTACGACGAACACAGTGCAGAGGAAGCATCTCATGGATCATCTTCTGACGTGTCTTCTGTTGAAGATGATGAAGTATCTGAGGGCCAAAATGATCAAACTTATGAACCATGCTTTGAAGAAGAGGAAACTTGTGATGAAGAATACCAGACAATATGCGTCGCAGAAGACGAATTATACAAACAAAATGCTGAAGACAAAGTTTATGGATCCTATGGGCCGTGTGATAAAGATTGCAATGCATATGGCTGTGAACATACACAATTCTCTACCGAAGGAGAAGATAATGCAGTATGCACTGAGGCCTGTGAACCAAGTGCTGAAGAGCACCATGAATATCAAAGTGAAGCCAATGAATCTAATGTTAATCAAGAAGCTAATGGATTCTGTACTGAAGAAGACTCTCATGATCAGTGTAATGAAGAAATGGATTATGACAGCACTCCTGAGACACATTTGAAAGATGAAGTCTGCACTGAAGAGAGAAAGAATGGTGCTCCATGTGCTGAGGAGAGTGAATCCCCTGAATCATTTGAGGTTATAACCAAAGACACCGCATTATGCACTGAAGGAAGCAAACCAGCTATGCCGGATGGTATTGAATTCAATGGGGATCAAACGGATTCCTCCACAACCTCTTCCGAAGAGATAGATGAGCGAAGCAAGTCATCTGAATTGTGTGAGCAACTAAACACACCATATCTGTCTCAGAACTGGGAAGAACACAATGGTGTCTCAGAGCATCTCCAACACCCAGAGTCAGAGGACCTTTCAGAGCAGTTGTCTGAGAAAACAAGCCTCCCTCTTGATGGTGCTGAACTTAGTAAAGACTCCATAGACTGCGAGCCACTTGCACATCACGCCGAACAAACAGAGCCCTCTGAACAAAGTGAGCTGGATGAGAAAATGCAGTTGCATGAATTTTTTAAGATTGTGGCCTCTGAACAAATAAGTGAGGAGTCTGAGGAGGAGCTGAGTGACGATGAGTCCTTTGAGTCCTGTGAATGCGAGTACTGCGTCCCGCCTAGAGAACAGGTCCCGGCAAAACCTCTGCTACCTCAAATCAAGTCAAAAGACTCAGGGAAGATCTGTGTGGTGATTGATTTGGATGAAACATTAGTGCACAGTTCATTCAAGCCTGTGAACAATGCGGATTTTATCATTCCAGTGGAAATTGATGGAACACTTCACCAGGTCCCCGTAACATCCTGGTTCGAAGAAATGGCCGACACAGAGCTACTAGATCTCATCCCATTCTTCGAGAGACTAAGCCAAGTGGAAGATGTCTACGATATTCTCAAGCAGCAGGGGATTGCAATCTAGTGCGTAATTAGACACTGGCGGCAACTTTTCACCACACGGGGGCCATAGAAGAAGCTGGTGGGCAACATGATTCAAGTTTCTTCCCACTAGAAGGACCTGCTAGTGTCTCTCGGACATTGTCGTCCTCCAAATTCCATTCACACAAAACATGATAAAGAGGCCACTCAGTTTGGCACAGAGACGGAACAATGAGGAACTGTTTTATGGCAAACATTGAAAAGAATGGTATCAATTATTTTTTCACATTTGATGTGGTAATCACCTCTTGGTTATGACTTTTCGCCCTGAAGACAAGGTTAAGCGAAGCCCTTTTTCATGGAACGGTgatcatttacagtgccttgcgaaagtattcggcccccttgaactttgcgacctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294235 lncRNA upstream 91868 41850004 ~ 41850231 (+) True G258447
TU294234 lncRNA upstream 92336 41849351 ~ 41849763 (+) True G258446
TU294233 lncRNA upstream 93108 41848731 ~ 41848991 (+) True G258445
TU294232 lncRNA upstream 94727 41847082 ~ 41847372 (+) True G258444
TU294231 lncRNA upstream 96439 41845446 ~ 41845660 (+) True G258443
TU294332 lncRNA downstream 51499 42016740 ~ 42017023 (+) True G258538
TU294334 lncRNA downstream 54011 42019252 ~ 42070212 (+) True G258539
TU294456 lncRNA downstream 262425 42227666 ~ 42227968 (+) True G258650
TU294463 lncRNA downstream 267864 42233105 ~ 42233311 (+) True G258657
TU294470 lncRNA downstream 276622 42241863 ~ 42242082 (+) True G258664
XM_021596902.2 mRNA upstream 26777 41786953 ~ 41915322 (+) False spegb
XM_036974099.1 mRNA upstream 26777 41842513 ~ 41915322 (+) True spegb
XM_021596901.2 mRNA upstream 174487 41740090 ~ 41767612 (+) True LOC110519972
XM_021596899.2 mRNA upstream 216344 41554471 ~ 41725755 (+) True LOC110519971
LOC118944668 mRNA upstream 1080919 40858297 ~ 40861180 (+) True LOC118944668
XM_021596908.2 mRNA downstream 22014 41987255 ~ 42160686 (+) False LOC110519975
XM_021596906.2 mRNA downstream 98603 42063844 ~ 42160686 (+) False LOC110519975
XM_021596907.2 mRNA downstream 98603 42063844 ~ 42160686 (+) True LOC110519975
XM_021596910.2 mRNA downstream 210640 42175881 ~ 42205548 (+) False LOC110519977
XM_036974103.1 mRNA downstream 226930 42192171 ~ 42205548 (+) True LOC110519977
TU292451 other upstream 1489919 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 1489919 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2274011 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 3097543 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 3341233 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 2286828 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 2555178 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3873680 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 3968878 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 4110243 46075484 ~ 46079425 (+) True G263733

Expression Profile