RNA id: XM_036974099.1


Basic Information

Item Value
RNA id XM_036974099.1
length 8892
RNA type mRNA
GC content 0.53
exon number 34
gene id spegb
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41786953 ~ 41915322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTGGAAGCCCAGAGCCCAGGAAGATAATTGACACTCGATTCAAGGAGCCTCCTGCCTTCCAGGCTGAGGGACAGGATGACGATAAAAACAGACTTGCGCCACACTGTGCGTGAGACTGAGGACGGCACTTTTGAAATGACCATCAACTCACCCCAGAAGTTGGACACAGGAGTGTACACCTGCAAGATCATCAACGAGTATGGAACAAAGCAATGTGAATGCAAACTGGAAGTGAAAGTGCCCCCGGTGGAGCCAGGCCTCGCCATCATCCGTCCAGTGAAGGACATTACGGCGGATGCCGGCGAGACAGTCATGTTTGAGTGCCACGTAATTGGACCACTGGACACGGACGTCGATTGGCTAGCAGATGGGAAGCTGATCCAGCCGGCTCTGCTCAACTGCAAAATGCATTTTGATGGGAAGAGGTGCAGGCTGCTCCTCAACTCAGTGCATGAGGATGACAGCGGCATGTATACGTGCAAACTGACCTCGGCCAAAGAGGAACTGACCTCGAGTGGCCAACTCAAAGTCATTCCTTCCATCGAGCCCCTATTCACCCGTAAACTGGACGTCTTAGAGGTGATCGAGGGCCGTAACGCCCGCTTTGACTGCAAGGTCAGCGGAACACCACCTCCCAGAGTCAGCTGGGGACATTTCGacCATACACTGGTAGAGAGCGATGATGTGCGCATCTTACAAGAGGGAGGTCGTCACTCCCTCATCATCTCTCATGTCACCAATGAGGACGAGGGCTTTTACACGGTCATCGCTCGCAATCCACATGGCGACGCCGAGAGCTCCGCTGAGCTCTATGTCCAGGAGCCCAGACCTGCTATCTCATCTCAAATgGCAAAGCTAGAGAAGATGCCATCCATCCCGGAGGAGCCCGAGGTGCCGGACAACGAGGTTGAGCGCTTCACCATGCCTGACTTTGTCAAGCCCCTGTACGACCTGGACGTGATCGAGGGCAAAGAGACTGTGCTCAAGTGTAAGGTGGCTGGACTGCCGTACCCCACCATTGTGTGGTTCCACAACGGCAAGAAAATCGACAGCACGGAGGACAGGAAAATGACACAGTTCAGAGACATCCACAGCTTGGTCATCCATTCTGTCTGCCACGCCCACGGAGGGGTATACAAGAGCGTAATCTCCAACAAGGTGGGCAAGGCCACCTGTTACGCCCATCTCTATGTGACTGACGTTCTTCCAGACCCTCCAGATGGGCCCCCAGTAATAGAGGCTGTTACTGGCAAGACGATAACCCTGTGCTGGAAGAAACCCCGGAGGCTGGATCCCTCTATTGATCCCAACACGTTGATGTATGCCATCCAACAACAAGTGCTGGGCTCAATCCAGTGGACCATCATAGCATCCAGTTTGAAAGAGCCTTGCTACACAGTGACCTCCTGCTCCAAAGGAGTCCGCTACACCTTCAGGGTCTTGTCAATCACCACCAAGGCCTTTAGCAAACCCTCTCCGTCCACAGACCCAGTGCAACTTGTCGACAGAGGTCCATATCTTCAGGAGGCTCCAGTAATAATTGATAAGCCAGACATGGTGTATGTGCAGGAGAACGAGTCAGTCAGCATCACTATCACTCTGAACCACATCAACGCTGCAGTAATCTGGAAAAGGAGAGGAGTGGTCCTTGCCACCAAACATGGGCTGTATGAGATGAGTATGCCCGATGACGACCAGCACTCTTTGAAGATCCTGAGGGTGAAGAGTGGCGACTTGGGTCAGCTGATGTGTGTGGCCTCCAACAAGTTTGGCAGCGACTCCTGCATCTTTAGTGTGGAAATGGCAGCACCGCCAACCTTTGAGACAATCATGGAGGATGTGGATGTGCACATGGGAGATACGCCTCGTCTGGCTGTGGTCGTGGAGGGCAAGCCCATTCCCGACATCATGTGGTTTAAGGATGATATATTGTTGTGTGAGAGTAGTCACATCACCTTTGTGTATGACGACAACGAATGCTCCCTCGTGGTGCTCAACACAAGTCCGGAAGATTCAGGAGTGTATACCTGCACAGCCAAGAACCTGGCTGGCTCTGTGTCCTGTAAGGCTGAGCTCACCGTGCACACAGttagagaagacaaggaggaTTCAATGGAGGACGAGGAGACCATTCTCAGGAAGATGCGCCGGCTGACTGACTACTATGACATCCACAAGGAAATCGGGAGAGGAGCTTTCTCCTATGCAAAACGAGTGACGCAGAAAGTGGGGAAAATAGAGTATGCTGCCAAGTTCATATCTGCCCGAGCCAAGAGGAAGGCCTCTGCACTTAGAGAGATGAATCTGCTGTCTGGGTTGGACCACGAGAGAGTCCTGTATTTCCATGATGCCTTTGAGAAGAAGAATGCAGTCATCATTGTCACAGAGATATGCAACGAGGAACTTCTGGAGAGGTTTACAAAGAAATCTACAGTGATGGAGTCGGACATCCGCTCCTGTATGAGACAGCTGTTGGAGGGTGTGGACTACCTTCACCATCAAAATATCGTCCATCTGGATATCAAGCCTGATAACATACTCATGGCAGACCACCATGGTGATCAGATCCGCATCTGTGATTTCGGCAACGCCATAGAGCTCACACCCGACGAGGCTCAATACTGCAAATACGGCACACCAGAATTTGTCGCTCCAGAAATTGTCAACCAAACTCCTGTATCCAAGGCAACTGACATCTGGCCGATTGGAGTCATCACATATCTGTGCTTGACTGGAGTATCTCCGTTTGCTGGAGAAAATGACCGCAGCTCCGTGCTCAACATCAGGAACTACAATGTGGCTTTTGAGGAGAGTATGTTCGCTGAACTGTGCCGTGAAGCCAAGGGATTCATCATCAAACTGCTGGTGGCAGACAGACTTAGGCCTGATACACAGGAGTGTCTCCGTCATCCATGGTTCAAGACCCTTACCAAGGGGAAGGCCATAAGCACAGAGGCCCTCAAGAAGTTTGTGTCTCGCCGAAAGTGGCAGCGGTCCCTTATCAGCTACAAATCCAAAATGGTAATGAGGTCCATCCCTGAGTTGCTGAACGACTCATCCAGCCACATCTCCATCGCTGTTCCCCGACACCTCAAAGAGGGCTCACCCCCACCATCATCGTCCTCTGACTCTGACGAAGATATTGACGAGCTGCCCTTCATTCCAATGCCACTCACCATGGAGTTCTCCGGATCAAGAATGTCTCTGAATGAGATCCCGGACGATCAGGAAGGCACAGGCAGGCCAAACGGCCCCATTGACAGACCAGGATCAGCAGTCGCTCATGGCCAACAGAAGATGGTGAGTGAAACcactgggagagagaaagaggctggAGATTCCGCAGGTAAAAGCCACACCAGGAAAAGGTCAACGCTAGAAAATGACAAGGGGTCTTCGGACGAGGAGGCTCCCGCAGAGTTGGTGCAAGTATCTGAGAAGGAAAGAAGGCCCTTGTGCAGAGGCTTGAGCTTAGAGTCAGATAAGCCAAAGGGAGGAACCAGAAGGGGGCCGCTGCGTAGAGGGGGCTCTGCCGACAGTGCGCTGCTACTCCACCTCGTACCAGAAGAGGGTGCAGAAGAGGAAACTCCGGAAAGGGGCCGGCAAGTCCTCAAAAAGACAGTATCCATGGAGCTGCCTAGGAGGAGCACAAGCCCAGGGCCTCTGAGTCAGGAGGACTATGCTCTCAAACTGGAGCTGATGCGGCAGAGGCTACTTCGAGGCGGCTCTGTAGACAAGAAGATGAGCGGCCTGCGAGGACCCCTGCTGGAGACGCTGGGCATGGACGATGGAAAGCAGCGGTTGTCACTGGAACGCTACTCACACGCCCCCCGCTTAGGGGTTCCCCCATTAACCAGGGCAGCTTCCAGCGACCAGCCTGGAGAAGACGAGCCCAAACCCAAATTGCTTCGCAAGAGCGCCTCCTTCAGTCAAGGAGATGCAGAGCCCATTCCTCTGCACAGACGGTCCGGGGAGCCACTGGAGATCCCGCAGATAGAGGAGCGAAGACTCAAGGAGGCCATATCCATGTCTGCTCTCACTGAGCCATTCAAGAATGACTCACGCCCTGTGACTCCCAGGGAACCTTCCCCTAAACTTCCCATACCAAGTCCAGAGCCTGGGGAACAGGAGACAACAACCaagatggaggacaaaaagaTTAAGACTGTGGAATCCATTGGCAAAAAAATGGATGGCGTGTCCACAGACAGTAATGCAGACCAGAGATCGAACACAGGTGGTTTCTCAAAGAAGAACATGAGCTTGTCAGAAGAAGCAATGATTGAACCAGAGTACGTGGATCTGAGGGAGCCTATCCCTACTTGGAGGGAGCCTAGCCCTCATGTGAGGGTTCTTACATTAGAGGAACCAATggaagaagagaaagaagagatTGAGGAAAAAGAGACTGTTCCTGTAGATGATCCGAAAGCTAGAGAAGTTGAAGAAATACACAAAGAAGTACAAAAAGAAGTCAAAGAAGAAGAAGTGAAGGCACCAGTAAAATCTTCTGAGATGGTCATTACTACAAGCTCCATAAGGGTCACGCCAGCACCAGCATTTTCAAGAGCAGCAGATAATGTTGTGACTCCCTTTCCACCTACGTACGTCGCTCCCTCTTCACCTGCCCTTACTGTACTCCCAGACGGTAGGACCTCTGCGTACGCTAGCATAATGCAAACCATCATGGTCCCCTCGCTTCAGCCCCTAGTTAGCCCCCCATTAGCAGACTCCACCCCTGTAGTTGTTCCAGTCCTTGCTCAAGCCCCATTTCCAGCACCAACATTAATACCCACATCTACAACTGTCCCTGACCCATCAAAGCCAGTAACTCTGCTATCTACACCAGGGGAACACCCTGCTGTCTTTTCAAGGGTGGCATCCCCCGAGCCCAAGGAAATGAGTCCACCCAGGGTTTCCCCATGCCCCACACCCCAACATGAGCTCTCGCCAGGGGGACTAAACCTCCAGGACATTGCCTCAGAGGAAATATTCAAGGCACGCTTCAAAAAGCGTGACTCTTCCGTCATTCGAGGCCTGAAGCTTCTCAACTGGTCAAAGCCTGAGGAGAAACAAGTAGCCTCTTTGGACTCTGCCGAGTCAGGCGAAGATGTATACCGCCCTGGGCCCGTTGGAGCACCGCTTGAGTTTGTCCCTAGGAGACTGGAGGAGAAGTCCAAGTCGGTGCAGGATCTCCGCGAGGCCCAGAAGGATCAAGGTTTTATGAGAAGGCTCTCCATGCGCCTCAAGAGGACTCCGTCAGCCGAGCGCAAGATAGAAAAGCCAAATGAGGAAGAACCGGTGGCTCCCAGGCGCCGGCTCTCCTGGGCTCTCCCCGGCCGAAGAGGATCCCATTCTCAGGAGAGAAAGGAAGTGGAGATGATGAGGATGGATGGGGGAATGGAAGCCGAGGTGGAACAGGAGGTCAAGGAGCCAAAGAAGCCAAACGAGTCGCCAGTCATGGCCATGCGCAGGAAGATCGAGTCGACGGTGTCCGGAATATCCATGAGGATCCGCAGTGCCTCGGAGGAGAGGAAGGTAGCGGCAGAGGAGAGGGAAGCCAACAAGCCAGAGAGCAAGAAGACACCCCTGTTCTCTATTCTGCGCAGGTCGACTTCCGAGGGACGTagcctaaagaatatggctggaCCCAGTGTCCCTCAGAACCAGCTGGGCTCTCAGTCAGGCACCGGAGCTTCCTCAGATTCCCTGGAGTCCATGTCCAGCGTCAAGTTGGAGACAGCATCAAAGGGGGCAGAGGGCGAACGTAGGTCCCGATGGGACCGTTGGGGCCTAACCAGAGGCAGCAAGAGAGACAAGACGGTCTCGCAGCCTGATATTCCAACGGCTATTGCCAGAGAAAATGGCTCCCTACGCTCTCGCTCCTACTCCAGACTGGCATCTGACTTCCCTCCCGTGTTCCACATCAAGTTGAGGGACCACGTCCTGCTAGAGGGAGATCCCATCACCCTTAGCTGCCTCCCTGCTGGCAGCCCCCACCCACACATCTCCTGGATGAAAGATAAGAAGCCTCTGCAGATTGATGCCAGAATGAACATGATCTCCTGTCCGGATGGCAGGCAGCTGCTGATGATCATGACAACCACTAAGAAGGATGCAGGGCTATACGAGTGTGTAGCTACCAACCCTCTGGCTTCGGTCTCCAGCTCCTGTACTCTCTCCCTTGCTCGGCTGCCCAATCATCCTGGGACTCCTGAGGTTCCCCAGCGCTATAAGAACACTGCCCTGGTCCTCTGGAGGCCATCAGACACTACAGCCCCCTGCACCTACTCTCTGGAGAGAAAAGCAGAGGGTGAGAGTAACTGGCTCATCGTGGCCACTGGAGTGGCTGACTGTTACTACAATGTGGTAGACTTGCCAGGAAGGGGCACCTTCAGGTTTAGAGTGGCGTGTGTGAACAAGGCAGGCCAAGGACCCTACAGTAACCTCTCAGAGTTAGTGTGCCTGGACGCCTCAGCACCAACCAAATCCAGTGGATCAGTCGTTGTGAAGACAGTCCATGCAGCACCGGTTGTCAAAACGTCAGCAATTACCGTCCCCTCCATGAAGCCTGTGCCTAGTAAAGTGCCGACCCCAGCCCCATCTTTCTCCCCATCCACACAGACCCCATCCCCCTCCgctgctgctcctgctcctgctgtACCAGCGGCCAAGTCTATTGCTTCTATCCCCGCTTTTAAACCTGTTGATTCCAAACACTCAGTCCCTCAGACCCTAACCAGCGCTGCCTCTGCCCCCATTGTTACTAATGTGGCCCCATCCCATCGGGCCATCCCTGAGATCCAAATCCCATCTCCAGTTCAGTCCGCTCCTGCCCCGGCTAAAGCCAAGACCACCATCAATATCAACGTCACGAAAACAGCACAGTCTCAACTGGGAACCGTAACCAAGCTCGCTCCTCCTATCGTTCTCCCCAAACCCCAGAGTCCCATCAATATCGTCTCGCCCATGACTAAGACCCCGCCCCCACCTGTGGCCCCTCCCACAGCCATCGGCAAACCCATTTCGTCTGTGCCCATGTATGCGCCAATACCGGCTACCACGGCACGCGACATCCCACCatccccctccacccccatcTCACCCCCGGTGGTGCTGGTTTCCAGCATGAGTCCTGTAGGGGATGGTGGGGTTACACCCACACGTATGACACCGTCTGGGCGGATGACCCCCTCCGGCACCCTGTCAGGACGCAAGACGCCCTTGGGGGGACGCCCAGGTGAGAGTTCCCTGCGCCAGGGAGTGCCCCAGAAACCGTACACCTTCATGGATGAGAAGGCCAGGGGCCGCTTTGGCGTGATCCGAGAGTGTAGAGAGAACGCCACGGGCAACCTGTTCATGGCTAAGATTGTGCCCTACGAGGCAGACAATAAACAGACAGTGCTGCAGGAGTACGACATCCTCAAGTCCCTCCACCACGACAAGATCATGGCTCTGCATGAGGCTTATGTCACGCCCCGCTACCTAGTGCTCATCTCGGAGTGCTGCAGTGGAAAAGAGCTCCTCTACAGCCTCATCGACAGATTCCGCTACTCAGAGGATGACGTGGTGGGCTACATCGTTCAGGTCCTGCAGGGTTTGGATTACCTGCACAACCGCCGCATCCTGCACTTAGACGTCAAGCCGGAGAACATCATCATCACCTACATGAACGTAGTGAAGATCATTGACTTTGGCAGCGCCCAGACCTTTAACCCACTCTTCCTCAAGCAGTTCAGCCCACCTGTTGGAACTCTGGAGTATATGTCGCCTGAGATGTTGAAAGGGGATGTGGTGGGCCCTCCGgctgacatttggagtgtaggcGTGTTGACCTTCATCATGCTAAGCGGAAGGTCGCCCTTCATGGATTATGATCCACAGGAGGCTGAAGCCAGAATCCTGGCAGCCAAGTTTGACTTGGGCAAACTCTACCAGAATGTGTCTCAAAGTGCCTCTCTGTTTTTAAAGAAGATCCTGTGTAGCTACCCTTGGGCCCGTCCTTCCATCAAGGACTGCTACAACAACTCATGGCTCCAGGATGCCTACCTGATGCGGCTGCGGCGGCAGACCCTCACCTTCACCACCACGCGCCTCAAGGAATACCTGGACGAACAGCAGAGCCTGCGGGTGGGGGTGGCCACCAAGCACAAGGTCCTTCTCCGGTCATACCAGAGCTCGACCCAGTCACCCACCAGCCCTATACCCCCTTTGCCCATGACACCGGTCACACAGTGAGCACGGCTTCATATGTCAAATGCATGAAGGCAGGAGCTGTTGCCTGAGAGGAAGTACGCAATCTAAACGAGGCAGGTCTTAGGACCGAGCTCCCTAACTTGGTGAGATGAGGTGTGACTTTGACCTTTTCATCCAAATGGACATAAAATCACAAAATCCAGCACTGGTTCTGAATATTGAGGACCTAACCTCTCTGCCTCCACCAGAAAGTCCCTATACTAAGCCTACAGGAAGCCCCACATTTTTTGTCTTGCAATGAGACAATCCCGCGATGGTTCTTTGTGTATTTCATGGGGTGATACATGTTTCTCAAGGACTGGATGCCAGCTCAAAGTTCCAAACCTCTGCTCTCTTTTTTTATGTTAACAATCTCAAAAAGTTTTCATCTGATCCTCTTGTATCCTCTTGTATCCATGTACACCAGATATCTTCTCGAAACATCTAGTGCATGTGTGATTTTATCTTTCCCTAGGATAATGACATTTGTGGAGATTACGTCTCTTCTAAGCAATTTTTTATGAACAAAGCGACACTACTGATAACATCTTTAACCCATGATTTTGGGTGCTACGGTATGCACACCATAGTGCTCAGTGTCATTTTCTATCTCTGATCATCAGAATGTTCTTGAAAACACAAGACGGAAtaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294181 lncRNA upstream 62029 41780175 ~ 41780484 (+) True G258396
TU294180 lncRNA upstream 63609 41778699 ~ 41778904 (+) True G258395
TU294010 lncRNA upstream 116467 41725782 ~ 41726046 (+) True G258228
TU294087 lncRNA upstream 139008 41631939 ~ 41703505 (+) True G258303
TU293775 lncRNA upstream 463108 41379018 ~ 41379405 (+) True G258000
TU294188 lncRNA downstream 7179 41922501 ~ 41965278 (+) False LOC110519974
TU294190 lncRNA downstream 40061 41955383 ~ 41965278 (+) True LOC110519974
TU294332 lncRNA downstream 101418 42016740 ~ 42017023 (+) True G258538
TU294334 lncRNA downstream 103930 42019252 ~ 42070212 (+) True G258539
TU294456 lncRNA downstream 312344 42227666 ~ 42227968 (+) True G258650
XM_021596901.2 mRNA upstream 74901 41740090 ~ 41767612 (+) True LOC110519972
XM_021596899.2 mRNA upstream 116758 41554471 ~ 41725755 (+) True LOC110519971
LOC118944668 mRNA upstream 981333 40858297 ~ 40861180 (+) True LOC118944668
XM_036974097.1 mRNA upstream 1139835 40461161 ~ 40702678 (+) True dnah7
XM_021596897.2 mRNA upstream 1141058 40461161 ~ 40701455 (+) False dnah7
XM_036974100.1 mRNA downstream 26777 41942099 ~ 41958607 (+) False LOC110519974
XM_021596903.2 mRNA downstream 26777 41942099 ~ 41965238 (+) False LOC110519974
XM_021596904.2 mRNA downstream 26777 41942099 ~ 41965241 (+) False LOC110519974
XM_021596905.2 mRNA downstream 40107 41955429 ~ 41965234 (+) False LOC110519974
XM_021596908.2 mRNA downstream 71933 41987255 ~ 42160686 (+) False LOC110519975
TU292451 other upstream 1390333 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 1390333 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2174425 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 2997957 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 3241647 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 2336747 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 2605097 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3923599 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 4018797 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 4160162 46075484 ~ 46079425 (+) True G263733

Expression Profile