RNA id: XM_021596899.2


Basic Information

Item Value
RNA id XM_021596899.2
length 1916
RNA type mRNA
GC content 0.55
exon number 10
gene id LOC110519971
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41554471 ~ 41725755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGCGAGCGCAACTGACGGACTCACTGAGCGTCTGAACACAACTAGCCGACCACTCATTTAAGCCCGTGGCATTTTTGGATATTACTAGGACGTCGCCGTTTCGAAACCGTGGGATATAAACATTCTTTGTTTCTATTTCTTCCTTCCACCCACAcctttttttatttgttattttctaTCCTCATGGGTGAACATCGTTCCTCTTCCTGCCCGTCCTCTTACGCTGATTTACCTGgctaaccccccccctcccccccaacacTATCCTACACCCTCCATCGCCCCACTCCCCCAACCGCCTTCATATTGTAGCTGCACCACATTGGATCGGGCGGAACCCGTTGATTCATCACTTCATGGGGCTCGCTTTCTTGCACGGAAAATGTCCCTTTCTTTGTCACTGAGCGCCCCTCTGAAACAGCCAACGTCTGGACCGGAGTTGTTGGTGCGTGTCTACCACTTCTGCCCAGCTCGCTTGTGTAGTCGGGGAACGCCGCTGAACTGAGATGGGTCTGTCGGTGGCGGCGGAGCCCCGACGCCCGAAGCAGTGGAGCCGGACAGTGGGAGATTGGGTCTGGATCACCGTTGTTTCGTTTCTCGCTACTTTACCTGTAGAGCAACTTTGCGCTTTCCCGTCTTCCCTGAGCGACTGTCAGACGCCTACCGGCTGGAACTGCTCTGGTTTTGATGACCGGGACACAGATCTCTTCTTGTGCGACACCAACACCTGCAAGTTTGACGGAGAGTGTTTGAGAATTGGAGAGACCGTGACGTGCATCTGTAACTTCAAGTGCAACAATGACTACGTCCCCGTGTGCGGCTCCAACAATGAGAACTACCAGAACGAATGTTATCTACGCAGGGATGCCTGCAAGCAGCAGTCTGAAGTGCTGGTGGTGTCAGAGGGCTCTTGTCCTGTCGatGTCGGCTCAGGCTCGGGAGATGATGGGGGTGAGGGGTCAGCGGAGACTGGGCAGAAGGAGACGTCTACCTGTGACATCTGCCAGTTTGGGGCGGAGTGCGATGTGGACGCAGAGGACGTATGGTGCGTGTGTAACATTGACTGCTCCCACATCAGCTTCAACCCAGTTTGCGCCTCAGACGGCCGTTCCTATGACAACCCCTGCCAGGTGAAGGAGGCGTCTTGTCAGAAGCAGGAGAGGATCGAGGTTAAATACCTGGGCCACTGCCAAGGTGACATCATGACAGGGACCAAAGCCGGAGACGGACACTATGCCAGGAAAGACTACTCAGaagagAAGCcggaccagagaggagaggtggccaTAGGGTTGTATATTCCCTGTCCCGAGCTCTACAAGAACTACTGTATCCACGGAGAGTGTGAATACCCCAACATACTGTCTGTGCCGTCCTgcagctgTCACTCAGGCTTCAGCGGGCCCCATTGTGACACTAAGGAGTTCAATGTGCTCTACGTGGTCCCCGGCTCTGGCAAGCTGCGCTACATCCTCATCGCCTCCATCATCGGAGCTCTTCAGGTGGCCATCATCTGTGTGGTGGTACTCTGTATTAccagGAAGTGCCCGCGGAGCAACAGGGTCAATCGGCAGAAGCAGAAGGCCACCCACTACAGCTCAGAGAACACCATGCGCGCCTCAACCCGCCTCATCTGACTGAGCCTCCCCACAATGGAGGAAACCCTAAGATTCGCTCCGCTCTGGGTCCAAATTGCACCAtagacacagatctaggatcagctttacCCTTCTTTCCTACAATCCCAACCTGAATTAACTATAAGGGAGTGGGTGGTGGGAGGGGgacaaaactgaccttagatcggCATCTAGGAGGTTGCACAATCCCCAACTTGCCGACCCCGATCATGAGGAATTGAACAATGGGGATTGGGGGGGAAACAAtggggattggggggggggggggggggg

Function

GO: NA

KEGG:

id description
K23608 TMEFF2; tomoregulin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU293775 lncRNA upstream 175066 41379018 ~ 41379405 (+) True G258000
TU293674 lncRNA upstream 283838 41270428 ~ 41270633 (+) True G257901
TU293391 lncRNA upstream 301819 41175003 ~ 41252652 (+) False G257624
TU293393 lncRNA upstream 301819 41235979 ~ 41252652 (+) True G257624
TU293390 lncRNA upstream 318048 41175003 ~ 41236423 (+) False G257624
TU294010 lncRNA downstream 27 41725782 ~ 41726046 (+) True G258228
TU294180 lncRNA downstream 52944 41778699 ~ 41778904 (+) True G258395
TU294181 lncRNA downstream 54420 41780175 ~ 41780484 (+) True G258396
TU294231 lncRNA downstream 119691 41845446 ~ 41845660 (+) True G258443
TU294232 lncRNA downstream 121327 41847082 ~ 41847372 (+) True G258444
LOC118944668 mRNA upstream 693291 40858297 ~ 40861180 (+) True LOC118944668
XM_036974097.1 mRNA upstream 851793 40461161 ~ 40702678 (+) True dnah7
XM_021596897.2 mRNA upstream 853016 40461161 ~ 40701455 (+) False dnah7
XM_021596895.2 mRNA upstream 1101929 40440040 ~ 40452542 (+) False LOC110519969
XM_021596896.2 mRNA upstream 1101929 40440040 ~ 40452542 (+) False LOC110519969
XM_021596901.2 mRNA downstream 14335 41740090 ~ 41767612 (+) True LOC110519972
XM_021596902.2 mRNA downstream 61198 41786953 ~ 41915322 (+) False spegb
XM_036974099.1 mRNA downstream 116758 41842513 ~ 41915322 (+) True spegb
XM_036974100.1 mRNA downstream 216344 41942099 ~ 41958607 (+) False LOC110519974
XM_021596903.2 mRNA downstream 216344 41942099 ~ 41965238 (+) False LOC110519974
TU292451 other upstream 1102291 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 1102291 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 1886383 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 2709915 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 2953605 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 2526314 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 2794664 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 4113166 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 4208364 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 4349729 46075484 ~ 46079425 (+) True G263733

Expression Profile