RNA id: XM_021596907.2


Basic Information

Item Value
RNA id XM_021596907.2
length 5000
RNA type mRNA
GC content 0.56
exon number 42
gene id LOC110519975
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 41987255 ~ 42160686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGGTGACTCTGCAGAGCACTGGAGGAGAACGGTGCATGTGGAGTGAATCAGTGGCTGTGGGCAAGTCACAGTTCACTCTGGGAGCTTGATCAACGCTGCTGGTGGAGTACTAGTGGGCAGCAGCAGGATGGATTGCAAGATTGGATTCCAGCTGGGTGTCTCTTTTTTACTGGTACTCTTGGTGGGTCATAGTGAGGCGTTGTGGTTTTCCTGGAGCAGTACAGACGGCACCACTGAGGCCCCAACGCTGGACAATGAGGGATCTGGGAACCCTGTGGCTAGCGGGAAATCACCAAAGCCGGACAACGTTGGAGAAGATGGGGCAGAGATCATTGACGTAGCTAGTGGGAAACATGAGAGCAGCGTCTCCCTCCTGCAGCTGATCGGGGACCCTCCCCCGGCTGAGATCACCAAGGTCTATGGCCCCGACAACAGCCCCGGCTACGTGTTCGGTCCCGACGCTAACACGGGCCAGCTGGCACGCGCCCATCTTCCCAGCCCCTTTTATCGGgacttctccctcctcttcaaccTGAAGCCCCAGTCCACCAATGGTGGCGTTATCTTCTCGGTCACAGACCCCTTGCAGCAGATCATGTATGTGGGTGTCAAGCTGTCGCCCGTGAAGGCAAACCGGCAGAACGTAATCTTCTACTATACGGAGCCCGACTCGCAGGAGTCGTACGTGGCGGCCACCTTCCCCGTGCACAATCTGGCTGACCAGTGGAACCGCTTCTCCATCTCCGTGCTGGACGACAAGGTCACCTTCTACATCAACTGCGACGACCAGCCCCAGGTGGTGCGCTTTGAGAGGTCCCCAGACGAGATGGAGTTGGAGTCTGGAGCCGGGGTGTTTGTGGGCCAAGCTGGAGGGGCCGATCCCAATAAGTTCCTGGGGGTGATCGGGGAGCTGAGGGTCGTTGGAGACCCTCGGGCCGCTGAAAGACAGTGTGAAGAGGAAGGGGATGACTCGGATGCCGCTTCAGGAGACGACGGAAGCGGTGACGAAAGGATACCGGACGAGGAGAAGAAAGGATCGGGTACATCCATATGGGACGCAAAGATACGAAAATACGTGTTGGTTGAAGATGTCAGACTGACAGTTACGACTACTCCAACGTCATCACGCCCCATTCAACAGCCCCCGGTGACCCGGAAACAACCAGAGGTGTCTCCtaagaaagagagggACCAGGGTGGATCTAGAGGCGAGAAGGgcgacagaggagagaaaggagacagaGGTCCTATTGGTTCAAAGGGAGATTCTGGTTCCGAGTCAGGCACACGAGGAGGGGCACGTGGAGAGAAGGGAGTGCTTGGAGAAAAGGGAATGAAGGGAAAAGCAGGCTTTGGCTACCCCGGCTCGAAGGGTGACCCCGGCCCCGCTGGTCCCCCCGGACCACCCGGCCTCCCAGGGCCAGCAGCAGAGGTGGTATCACGTGGCGACGGCTCCGTGGTTCAGACGGTGGCAGGTCCAAGAGGACCAGCTGGGCCTGCTGGTGCCTCCGGCCCTGAGGGACCCGCAGGAGCTGACGGAGAGCCTGGTGATCCAGGTGAAGATGGATCTCAAGGCCCTGTTGGACCACCAGGCTTCCCTGGAATCCCAGGAGACCCCGGGCTCAAAGGAGAGAAGGGTGACCGTGGTGAGGGCCAGCCAGGCCCCAGGGGACCTCCAGGGCCCCCCGGACAACCAGCGCCAACCAGACACGACCGGCCGACCTTTGCAGACATGGAGGGCTCTGGGTTCCCTGACTTGGAGACACTTCGGGGACTGCCTGGTTTGCCTGGCCCTCCTGGCCTCCCCGGGGCCCCAGGTACCTCTGTTGTTGGGACAGGGGTCTCTGGCTTATTTGGCCCCAAAGGTCCCCCAGGACAGGATGGTGCTCCTGGTCAACCGGGTTTACACGGCCTGCCTGGTGCTGATGGTCGCCCAGGAGCTGCAGGGGCCAGGGGAGAGAAGGGTGATCCAGGTGAACTCGGTCTTCCAGGAGCAGTCGGAGCGAAGGGTGCACAGGGATTGAATGGCATTCCCGGGCAACCAGGACAGGGTGGATTGGCTGGCCTCCCTGGACCAATGGGACCACTGGGACAACCCGGGCCACCAGGACCCCCCGGACCAAGCTATCGTGTTGGTTTTGATGACATGGAAGGCTCTGGTGTGGGAGTGGCCAATGGAGTTCCTGGAGCCAGAGGACCAGAGGGGCAACAGGGTCCTCCTGGCATCCCTGGCCTACCAGGCAGGTCTGGTTTCCCTGGTATTCCTGGTGAGAAGGGAAGTGAAGGACCACAGGGAAGCGATGGCCGACCAGGGTTGGACGGTTTCCCTGGTCCTAATGGACAAAAGGGTGACAGCGGGGACAGAGGAGAAAGGGGCGAATCTGGTCGCGATGGAAACGGACAGCCTGGACCACCAGGCCCACCCGGCCCACCAGGACAAATCATCTACCAGACCTCCAGCAGTTATGATGGTGTCGTTGGAGGCGCCGGGCCCCAGGGCCAAGCTGGATTCCCTGGCCCGATTGGACCAAAGGGCGACATGGGAGATCCAGGCCAACCCAGTTATGGAGTCAAGGGCGAGAAGGGCGAGCCTGGCTCAATCATTGGGCCTGATGGGAATACTTTGTACCTGGGAAGATTGTCGGGTGAGAAGGGCGACAGAGGACCTGCCGGACCCGTCGGGCCCCCTGGGCAGTACGGTTCTCCTGGGATAAAGGGTGAATTTGGAATGCCCGGAAGACCTGGTCGTCCTGGTGTGAACGGATACAAGGGTGAAAAAGGAGAGCCATCCACAGGAGCTGGATTTAGCTACCCAGGTGTCCCAGGCCCACCCGGGCCGCCGGGACCACCCGGACCAGCTGTGCCCGTAGACCGCTTCAATGGATATGACACCTCAAGGAATTATCCAGtGACAAAAGGGGAGAAAGGTGATTTCGGAGCTCAAGGTCTCCCAGGAACGCCAGGTGTGGCCTCTAACTTCGACATTTTTACATTCAAGAATGACCTGAAAGGAGAGCGCGGCGATACAGGCGTGAAGGGGGAAAAAGGAGAGCCAAGTGGTGGCTATTATGACCCCCGTTTTGGAATACAACAAGGCCCGCCAGGACCCCCTGGAAACCCAGGACTTATGGGTCCAAAGGGAGATTCCATCACGGGCCCCCCTGGTCCACAGGGCCCACCAGGCTCCCCAGGGATTGGCTACGACGGTCGTCCAGGAAACCCAGGCCCACCAGGTCCTCCCGGGCCCACAGGGTCCCACTCACTACCAGGGGCCTACAGACCTACCCACCCCATTAGTATTCCTGGCCCCCCCGGACCTGCTGGACCACCTGGaatacctggtcacacctcaGGGGTGACAGTTTTGAGGTCATACGACACCATGATTGCTACTGCAAGGCGCCAGTCGGAGGGCACGCTCATCTACATTGTCGACAAAACAGATCTCTACATCCGGGTCCGCAATGGATTCAGACAAATCATGCTCAGTGACTACAGTCCCTTCTACAGAGATCTGGACAACGAAGTAGCGGCAGTCCAGCCTCCCCCTGTCGTCAATTACCCCCAATCCCAGGACCACTCGGCCAACAATGGAGCTGAACAATTCTCCCAAGGCGGCGCTGCCACCCACCCCATCGTGCCTCCTCCTCGCCAGCCTATTGAGATACCCAGGCCCGCCCAACCCAACAATCGCGACCCCAGAGACCCCCCTCAGTATGATCACAGATACCCCTCTCAGACTGACCCTAGGTACCCCCCTCAGACAGATGGCCGCTACAGCCCTGTGCAGCCTGAGAACAGGTATCCCACCCAGCCCGAAAGACGATATCACATCACCCCCCAGAGACAACCTGTTCCCCCTCCAGTTCCCCAGCCTGCCGGTCACATCCACACATCAGGGCCAGGACTCCACCTGATCGCCCTGAACACTCCCCAAGTGGGCAACATGCGTGGTATTCGAGGGGCAGACTTCCTGTGTTTCCAGCAAGCTCGTGCAGTGGGCCTGAAGGGCACCTTCAGAGCTTTCTTGTCCTCCAAGCTCCAGGACCTCTACAGCATCGTTCGCAAGTCCGACAGAGACAGCCTCCCCATCTTAAACCTCAAGGACCATGTGCTATTTAATAGCTGGGAGTCATTGTTCAGTAAgactgaggggaggatggaggaaaaTGCACCAATCTACTCCTTTGACGGCAGAGATATCCTCAGGGACAGTGCATGGCCAGAGAAAATGGTCTGGCACGGCTCTAGCAGCGAGGGTCACCGCCAGACAGATAACTACTGCGAGACATGGAGGGCAGGAGACCGTGCAGTGACTGGCCTAGCGTCTTCACTGCAGACCGGCCAGCTCCTACAACAGTTGCCCAGTAGCTGCTCTAGCTCCTACATAGTGCTGTGTATCGAGAACAGCTATCTCTCTCATtccaaaaaataagaaaaaacctGTCCCTGTTTCTTTGGTCCTAGTAAACGCAATACAATTATCCAAATAGGCTCATTCCTCCCTCCCGCGCCTCCAAAACATGACGTCCTACAAACTAGTTCTGCAGCTCTTGCCTGGCAGAGAAGCTCGCCATTGTCTTCTTCATCCCTTCCATAATGCCAAAGAGACGGGTCGAACATAGAGGTGTTTGTCCTTTTCTCGGGGCATTGGCACATATTTTCCAAGGGGTTGAACAAGAGAAGAGAAGCTAACTGCGGCAGCATTTTTTTATTGTatccattaaaaaatatatattgtatatgatatctgtgttttatttttatttctgtttttatcaaTGTTACTTTTTAAACTGTCTTCAAATTTGGTGTATTCAATTAGCTATACATTTTCTTTGTAccgttttccacatttttgttttattttcatttcatTTAAGGCTTGTGGTTTACTAAGGGGGTAACCTTTTAAATAATATTTTAAAATTAAAGAAGAGAATAGTTATTTATTTTGAAATGAAGTTATGTGAGAGCATACGATATGATTTGGAAAAG

Function

GO: NA

KEGG:

id description
K06823 COL18A; collagen type XVIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294332 lncRNA upstream 46821 42016740 ~ 42017023 (+) True G258538
TU294188 lncRNA upstream 98566 41922501 ~ 41965278 (+) False LOC110519974
TU294190 lncRNA upstream 98566 41955383 ~ 41965278 (+) True LOC110519974
TU294235 lncRNA upstream 213613 41850004 ~ 41850231 (+) True G258447
TU294234 lncRNA upstream 214081 41849351 ~ 41849763 (+) True G258446
TU294456 lncRNA downstream 66980 42227666 ~ 42227968 (+) True G258650
TU294463 lncRNA downstream 72419 42233105 ~ 42233311 (+) True G258657
TU294470 lncRNA downstream 81177 42241863 ~ 42242082 (+) True G258664
TU294492 lncRNA downstream 163785 42324471 ~ 42327172 (+) True G258682
TU294595 lncRNA downstream 283178 42443864 ~ 42444118 (+) True G258784
XM_021596904.2 mRNA upstream 98603 41942099 ~ 41965241 (+) False LOC110519974
XM_021596903.2 mRNA upstream 98606 41942099 ~ 41965238 (+) False LOC110519974
XM_021596905.2 mRNA upstream 98610 41955429 ~ 41965234 (+) False LOC110519974
XM_036974100.1 mRNA upstream 105237 41942099 ~ 41958607 (+) False LOC110519974
XM_021596902.2 mRNA upstream 148522 41786953 ~ 41915322 (+) False spegb
XM_021596910.2 mRNA downstream 15195 42175881 ~ 42205548 (+) False LOC110519977
XM_036974103.1 mRNA downstream 31485 42192171 ~ 42205548 (+) True LOC110519977
XM_036974101.1 mRNA downstream 35780 42196466 ~ 42198481 (+) True LOC110519976
XM_036974114.1 mRNA downstream 300851 42461537 ~ 42527912 (+) False LOC110519988
XM_036974113.1 mRNA downstream 300853 42461539 ~ 42527912 (+) False LOC110519988
TU292451 other upstream 1611664 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 1611664 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2395756 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 3219288 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 3462978 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 2091383 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 2359733 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3678235 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 3773433 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 3914798 46075484 ~ 46079425 (+) True G263733

Expression Profile