RNA id: XM_036974114.1


Basic Information

Item Value
RNA id XM_036974114.1
length 6771
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110519988
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42461537 ~ 42534154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtacatggagccattgaacactggtcactttaataatgtttacatactgtttcacccactttatatgtatatactgtatctagtcatggctcattcTATAGAACTTTACATTTTTCTGAATTAGgtgtgtatttgttttatttattgctaggtattactgcacagTTGGAGCTACAAACACAAGCAATTTGCTGCACCTGCACTAACATCTGAAAatctgtgtatgcgaccaataaaggttgatttgattgatttgatatgactggggaagtagataaagggcctcattgacaaaatcctgaagtatccctttaagttaCAATATTACCATATTTTGTTTATGGCTAGTCTACAATCTTGAAGAGCACATTATATAAttccaaataaatacaaataggcCTAACCCAATCACTGTTGAAATACTTCATAGTTAATTAATTTAATGGACATGGAGGGAAAGAAAATATAATAATATTCTATAGAACATCGTTTTCACAACAAATGGGAGCTTTTGAACATAAGTGGATCAAATATAATGTTATTGTTGTGAAATATGCATAGCCATTTGTCATAGTCCTTGCCTTTAAGACGTACACGACAAGGTTTTGTTTTAGCGCTCAAAACTCATCATTAAAAATAGTGACGAGGGTGTGAGAGACTGCTGTCGTCCCATGGCAATTTGGTCGCTGCCTGCATGAGCCCCGGAAATTGAATTTGCGTCACACCCGCCATACGAAGCCTTTCATATCAAGCATGCATTTACTTTAAAGGCTGCTCTGGCAACATCGCGTCTCTGTCCAAAGCGGGTTAACCAAGTGGATTTACAAAGATACAattaaaaatagtaaaaaaaaaaaaaaaaaaatgaatttttaTGTTTAAAACAAATCTTACATAGCCTATTAAATTATTTGGATTCCATATCTTAATAGATATATTGCCAGTCAATTTATCTTTATTATGCGTGTTTCCATGGTACTCAACTATTTGTGATTTCCTCTGGGCAGTTCACGTGTTACAAATGGGCGGATTCGATACAAACGACTGCAACGTTTGTTAGAAATGTCCAATTTAGCGTTTGGATAGAAACCTCACAGGAAGAGGTCTTGAAGACGGATGTAACCCAATGACCAATGTCGCGAGTGGTAACGAACGGTTGCCCAGTCATTTGTGATTTGACAAATGTTTCTCCCAACATTGTGACAGGCTAGTTGTATTTTCTTTCCTTGAGACGTGCTTTGGATTCCTCTTCTACCTTCAACGATTTGGACCAGTAGCCTAATTACCGGGCAGAAACCAAGACATGGGGACTCAGGGCATAGGACGTAAAAGAAATCCCATTAAGGACAGGTCGACGGCCGAGGATGATACCCTTAATCTCATTGCAAGAGAGGCAGAGGCCAGGCTTGCTCTGAAGAGGGCGGCCAGGGCAGAGGCCAGAGAGATCCGTATGAAGGAGCTGGAGAGACAACAGGAGGAGATCTCAGACGATGATGAGCAGATGTCGGTGGGCAGCCGAGGCAGTGTGAGGGTGGAGGACAGAGATTTCCTGGAAAAGGGATCTCAATCTGCTTCCACCCTAACGGCAGCTACCCTCGCTTCACTCAGCGGGTCTTCCTCCCGGAGAGGAAGTGGCGAATTGTCGATGACTGGCGACACAGAGACCTCCATACTAGAGATCAAGGATTCCCttgtggaggtggaggagaagtaCCGCAAGGCCATGGTGTCCAACGCCCAGCTGGACAATGAGAAGAACAACCTGATGTACCAGGTAGATAGGCTGAAGGACACGCTCATGGAGCTGGAAGAGCTGCTGTCCGAGTCACGCCGCGAGTACGATGCAAAGACCAAGGACTTTGAGTGTGAGAAACATGCCTACGGTGTGCTCCAGTTCCAGTTCAACGTGATGAAAGAAACGCTAAAACAGAGCGAGGAGTTACTAACGAAACATGGAATTGTCCTCGGACCTGACCTGACCACCAATAGGGAAAAGGTGGAGATGGTAACTGAAAGGTCTGCTAGTAGAGATCCAGCTTATCAATTGGCTCAGGACTCCAAGACGTCACCCACGGAAGGGGGGAACATCATGCTCGGCAGAGCTCAGGATATGGAATTGGGAAGTAGAGGAGATAAGATGGTGGATCCAGGAAGGTCCAGGCAGCAAGTGGAAACACATGAGGCGGTTCAAGAGAACCATCTGACCTCGCCCACTCCCTGTAGCCTCACTGGTGTTTCTGAAACCGAAACGTCTATGGTGGCTCGTCCATGCTCGCCCAAATTGGGGGTTGAGATTGAATGCAGTAATGTCAACAAAGACTCTGACAATGGCATACTGGTAGTAGAGGTCAAGCATGGACCGGTTTGCGATTCTGAGGTAATTGTTCCTGAGGAAGAGCTTacagaagagggggagggatacaAACCAGCAGGCATGGAGGGGACAGTGCAAGGGAGAGTAGAGGCCACAAACAAATGGGAAATGGGAATAAAAGATTACAAGGCATATGATATGGAGGCCAAAGTCACCAAGAGTAGTGATCACACAAAAGAGCCTACCTCAGAATATGGTGCATTAGCTGAACAAGATAATATAGCATTGAGGAAAGAGGTTGTGAAAAGTATAGACTCATGTCCTCACCCTAGGGAAACCATTGAGGACACCATACAAAATGGCACACAGATTAGCCCAGGGACTGACCATGATACTAGTAAGAGCGCAATAAAATCAGAATGTAAGCCTCAACCTAAGCTTCAGAAAACAAAGGCAGAAGCGTTATCAGAGACAACTGACACTCAGCCACAGGCCCAAGGaggcaagaagaagaagaagaagaaaggcaAGAAGGGAGGGAGCCAAGGTGATGAAAAGCAGGAAGACTATAAGAAGAGCACAACAGAAAAGGGTGTAGTCTCCATGAAAAATAGCACACAGATTCCCCAAAGAACAAACCTTGATACTACTAAGAGCCCAGTCGAATCAAAGGCTAAAGTGTTGCCAGAGGCCACTGATATGCAGCCACTGGCCCAAGGAGGCAAAAAGAGGAAGAAAGGCAAGAAGGGAGAGACACTAGGTGATGAAAACCAGGGAGACGATAACAAGAGGAGCAAAACAGAAAAGGATCTGGACTCAGTCTCAACAGATAAGGAGCCAGTAGTGGAGGAAGTTATCACAATCGAGACACAGGAGCTTCTAGAGGAGGGGACCGGTAGTTCACCAAATCAAGAACTCCAAAGCCCTAAAGAAAAAGCACAAACCATAGCTGAGGGAGGGAACCTGAAGGAAGAAGAACAACAACTAGCAGAGGGCCGAGTAGAGGTTAAGAGTGAGGAGCCTCCCATTGGAACCACCAAAGTATGTCTGACGGACCAAGCCAAGAGTGAGGAAGTTGTCAAAAAGGACCACCAAAAACCTTCCATGGAATCAGAGAAATCAGAAGGCGAGATATCAGTATTATGCCATGAGTGCGACATTGGTATTGTGGATCCTGTTAACCAGCAATGTATAACCAATTGTATAACCAGTGCTGATAACCCTAAAGAGAAATTAGAATCCACAACAAATACTGGTACCCAAAAAGACAAGTCAGGGTACACAACCAACCCTGATAACTTTGTAGACTGCCTGAACTCTTCAGCTGACCTGAAATGTCCATTGGACTTGAAAGAGTCCACTGCTGAGAATTCAAACAATGTCAAAGAAGAAGATGCAATCAAGGTCTCGGTTGATGAGACTCAAACAATCCAAGACACAAAGGAAGAGGGAATTAACTTTCATGGTCGCATAGTTCTAAGACCGGCGCTCGAGAAGAGCATGGCACCTGAAGATCTTATCGCCGATGATGGTGTCATTACTCAACCAGAGCATGTTACCGAAAATGCCATAAAATACCTGCAAGTGGCAGGTCAGGATGAACAAAATGGGAGCCCAGATGAGTGTAAAAATGCACTTGAACATAAAGACATTTCCATAGCATTGCCAGCAAGTGTAGATAAATGCAAAAATGTATCAGGAGAGAACTGTTGCACATCGCTCGACAGCAACTACCCTGCCGCTGAGACCATAAGACAGCCTGAACAATTGATGGATCTACCTGGTTGTCCAGTCGCTGACAAGCACTTAGATGACAACAACAAGCCAGTTACACTTGATGAAGAAAAGGCATCAAATGGAGGGATCTCCACAGAGACCGAGCTGGATGATACAGAAACACGACTACAGGACCCTGTAAAAGAAACTCCGGAGACAATTAACTATTTTAGGGAACAGGGCTACaaagaaagcaaaccatgcactATGGTGGCCGAAGCAGAAGAGCAAGACGATCCCATTGAGGCCAAGCTGGAGGGTAACAAGGTACCTGGACCCAGTGAGCAGGGGAATGATGAGGGGGACAATGATATTGATGAGGGTCAATCGTTTGACTTTAACTACCTAGATTCGGTGGTTTCTGCAAATGTGTTTCCAGTAACATCCCAAGAGGTCAGCCAGGAGGTGAGAATGATGGAAGGCAACAAAATGGAGGTAGAGCCAGGTAGAGAGAAGGCAATCAAGGATGACGAAGACTGGGACAAGTCAACAGGAAAACCGCAGGGCACAGTAGAGGGAGTTAGCACAATAGTGGCAAAGCAGCCACTTGAACGGGGGTCAGATAGTGCACCAGAATAGCTCAGAAGCCCTGAAGAAAAAGCACAAACCAGAGTTGCAGGCCAGAATGCCAATAAAGAACAACAACTAATCACTTATTTGTGTAATATACGAACAGAAAGACATtgcagagggagtgtgtgtgtctgaacaaCAATGTGTAGGTGAGAGTGAGAGCCTGCAGAATGCAACAGAGGTAGTGGCTTTGCCagtagaggagggggaagaggaaaatcCTGTATGGGTCAAAGAGAACGTAGTCAAAGTACATATTCAGCAGGGGGTGACGGAGCAATCTAGGTCAGGCTCGAAAAAGGGCAGGAAAAGGCAAGGGGAAAGAGGACTGACGAATTACCTAGTTTTTAGGTCTGCCCTCAATAGAAACTGCAAATATTTATGATAGGAATTGCAGAGTTTAAACTGCTGGAGCCCGAAGCACCTTCAATTCAAATGAATTCCAAAGCAATCAGAGAGATGTTTGTGGGTATTTTAGCTCATTTcgattaaccctttacactcgtacccgtatgtatacaggttgaaaatggcagaatTGGGCACTAATAAGCACCTAAATTGGGCTGcgcagtaacatgctatacatgacgtcagagctctggCTCTGCGCTTCACAACGCTGTATGGGGTTTAACAAACAGCCGTTCTGAACATGAACATGAACTGAACACAAGACGTTTCCCCCATTCCTCCCattaattgggcaacttttgtaCATTTTTGGTTGTCCGAGTGAGGGAAAAGCTCTGCATTTAAGATTactatgtattttgaaagatgagacgttgaaGTTTATAATAACGCTTTGGcatcatacaagcaagccaaacacccaAGTCCAAATTTGAACTTCAAATTTCCAAATCATAAAAatcatgtcatatacagtgtcaacgtttatgatcactatgtttgatgtacagttgcAAGATGACATGGCGTTATACCCTAGGTCGTTCTGGACAGAATGAGCTTATGTTTATTGTGAAGCAAATTTGCCAGGGCACACGCACCTTAATTCAGTCATGACTCCTTTCTACGTGCACCAAAGTTTatctgaattgccttgtgaaagcctaacactgtgaaattgtattttataacttagcttgTGTGATGGCGGGGATGAAGTGTTGTGTTCCAAATGAAACAACTACAAGTGTACTtactctagttcctcaacggcacagctaggagaacTCCAAAAAGTACCTTTGTAGTTGAAGACTCGTCTTTgtgtcataaaagtgcattggaAATTGCTTAGGAAccgtgcacactttggagaggtgtatGGCCActtcaaatcttatttgtcacatacacatggttaacagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgaccatgcagtaatatctaacaagtaatctaacaatttcgaAACTCCTAGACaatggagacaccagttagtcctctcacgcaaacccttgtcattttttttgtcttatgttgcacctaccccacattcTCCAGGAATAGTCTTATGTTACTGAATTTGTTAACGAATGCagcaaaaagtacagtaaatgtaaaaagcACATAAAATCAGTGTAATGTTAGGATTCAGTATTGTCAGGTGAAGAGTTGTGCACTCACCTTTTGGTCTAATAATTGTCCcatctccaaactgttccttttcaattgctaccatggttatgtatgtgatttcttctgtaagaaacgtTTCAATTTatccctatccatataggccaattcccacgagtgtaaagggttacaCAATTTTTTTTTAGGTGAAATGCTGTGCAGAATCATCTAATTGTCTTGAGATTTTGTTCTATATTATCTTGAATAGATGTTAATGTGCATGACATCCTGTAGATCAACATGGGTAAAATGACGTTGAGTAGACAATATTGCAGCGGATTATATATTTATTGTTATTTCTTTAAACTCTGCTTATGTCCCTGTATTATTGTACAATGCGTTTTCCTATGTGAAATGCACCATTAATGTTTtccaggtgtttttttttttgcttaagTGCTTTGGGAAGTTGGTCATAAAATGGGATGGGTAATCTTACCATGCAGACTTTTCCCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294595 lncRNA upstream 17419 42443864 ~ 42444118 (+) True G258784
TU294492 lncRNA upstream 134365 42324471 ~ 42327172 (+) True G258682
TU294470 lncRNA upstream 219455 42241863 ~ 42242082 (+) True G258664
TU294463 lncRNA upstream 228226 42233105 ~ 42233311 (+) True G258657
TU294456 lncRNA upstream 233569 42227666 ~ 42227968 (+) True G258650
TU294716 lncRNA downstream 84475 42612387 ~ 42614145 (+) True G258877
TU294722 lncRNA downstream 88732 42616644 ~ 42634599 (+) True LOC110519981
TU294803 lncRNA downstream 238587 42766499 ~ 42766703 (+) True G258961
TU294845 lncRNA downstream 301847 42829759 ~ 42830245 (+) True G259003
TU295895 lncRNA downstream 416739 42944651 ~ 42947853 (+) True G259974
XM_021596910.2 mRNA upstream 255989 42175881 ~ 42205548 (+) False LOC110519977
XM_036974103.1 mRNA upstream 255989 42192171 ~ 42205548 (+) True LOC110519977
XM_036974101.1 mRNA upstream 263056 42196466 ~ 42198481 (+) True LOC110519976
XM_021596908.2 mRNA upstream 300851 41987255 ~ 42160686 (+) False LOC110519975
XM_021596906.2 mRNA upstream 300851 42063844 ~ 42160686 (+) False LOC110519975
XM_021596931.2 mRNA downstream 15709 42543621 ~ 42550621 (+) False LOC110519991
XM_036974115.1 mRNA downstream 15718 42543630 ~ 42550621 (+) True LOC110519991
XM_036974116.1 mRNA downstream 34228 42562140 ~ 42590366 (+) False pgap1
XM_036974117.1 mRNA downstream 34228 42562140 ~ 42590366 (+) True pgap1
XM_036974120.1 mRNA downstream 88657 42616569 ~ 42682056 (+) False LOC110519981
TU292451 other upstream 2009357 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 2009357 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2793449 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 3616981 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 3860671 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 1724157 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 1992507 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3311009 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 3406207 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 3547572 46075484 ~ 46079425 (+) True G263733

Expression Profile