RNA id: TU294845


Basic Information

Item Value
RNA id TU294845
length 487
lncRNA type intronic
GC content 0.35
exon number 1
gene id G259003
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42829759 ~ 42830245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgtggacaggtgtcttttatactgagttatacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagacagaaatcttgcttgtttgtaggtgaccaaatacttatttacctccaaaatttgcaaataaattcataaaaaatcctacaatgtgatttctggattttttccccctaattttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatatttttaagtgggagaacttgcacagttggtggctgactaaatacttttttgccccactgtatgtatgtatatatatatatatatatatatatatataaataaataatgccACAATGAATAAATACACAGTAAATGATGAGTAAAATGACGAGTACAAATTACatggctacagtgccttgcgaaagtattcggcccccttgaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294803 lncRNA upstream 63056 42766499 ~ 42766703 (+) True G258961
TU294722 lncRNA upstream 195160 42616644 ~ 42634599 (+) True LOC110519981
TU294716 lncRNA upstream 215614 42612387 ~ 42614145 (+) True G258877
TU294660 lncRNA upstream 263651 42493455 ~ 42566108 (+) True G258824
TU294595 lncRNA upstream 385641 42443864 ~ 42444118 (+) True G258784
TU295895 lncRNA downstream 114406 42944651 ~ 42947853 (+) True G259974
TU295988 lncRNA downstream 189175 43019420 ~ 43019973 (+) True G260062
TU296308 lncRNA downstream 394602 43224847 ~ 43225135 (+) True G260366
TU296317 lncRNA downstream 406010 43236255 ~ 43236469 (+) True G260375
TU296377 lncRNA downstream 493350 43323595 ~ 43417280 (+) True G260432
XM_021596930.2 mRNA upstream 113931 42696546 ~ 42715828 (+) False LOC110519990
XM_021596929.2 mRNA upstream 113956 42696840 ~ 42715803 (+) True LOC110519990
XM_036974118.1 mRNA upstream 147703 42617164 ~ 42682056 (+) False LOC110519981
XM_036974122.1 mRNA upstream 147703 42617164 ~ 42682056 (+) False LOC110519981
XM_036974123.1 mRNA upstream 147703 42617164 ~ 42682056 (+) False LOC110519981
XM_021596932.2 mRNA downstream 65373 42895618 ~ 42944597 (+) True LOC110519992
XM_036974135.1 mRNA downstream 221357 43051602 ~ 43083760 (+) True LOC110519989
XM_036974136.1 mRNA downstream 339540 43169785 ~ 43513887 (+) False LOC110519984
XM_036974137.1 mRNA downstream 475618 43305863 ~ 43513887 (+) True LOC110519984
XM_021596934.2 mRNA downstream 1000716 43830961 ~ 43845629 (+) True LOC110519994
TU292451 other upstream 2377579 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 2377579 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 3161671 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 3985203 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 4228893 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 1421824 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 1690174 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3008676 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 3103874 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 3245239 46075484 ~ 46079425 (+) True G263733

Expression Profile