RNA id: TU294660


Basic Information

Item Value
RNA id TU294660
length 234
lncRNA type read_through
GC content 0.41
exon number 2
gene id G258824
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42493455 ~ 42566108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcagacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtagattatatttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294595 lncRNA upstream 49337 42443864 ~ 42444118 (+) True G258784
TU294492 lncRNA upstream 166283 42324471 ~ 42327172 (+) True G258682
TU294470 lncRNA upstream 251373 42241863 ~ 42242082 (+) True G258664
TU294463 lncRNA upstream 260144 42233105 ~ 42233311 (+) True G258657
TU294456 lncRNA upstream 265487 42227666 ~ 42227968 (+) True G258650
TU294716 lncRNA downstream 46279 42612387 ~ 42614145 (+) True G258877
TU294722 lncRNA downstream 50536 42616644 ~ 42634599 (+) True LOC110519981
TU294803 lncRNA downstream 200391 42766499 ~ 42766703 (+) True G258961
TU294845 lncRNA downstream 263651 42829759 ~ 42830245 (+) True G259003
TU295895 lncRNA downstream 378543 42944651 ~ 42947853 (+) True G259974
XM_021596910.2 mRNA upstream 287907 42175881 ~ 42205548 (+) False LOC110519977
XM_036974103.1 mRNA upstream 287907 42192171 ~ 42205548 (+) True LOC110519977
XM_036974101.1 mRNA upstream 294974 42196466 ~ 42198481 (+) True LOC110519976
XM_021596908.2 mRNA upstream 332769 41987255 ~ 42160686 (+) False LOC110519975
XM_036974120.1 mRNA downstream 50461 42616569 ~ 42682056 (+) False LOC110519981
XM_036974121.1 mRNA downstream 50481 42616589 ~ 42682056 (+) False LOC110519981
XM_036974119.1 mRNA downstream 51055 42617163 ~ 42682056 (+) False LOC110519981
XM_036974124.1 mRNA downstream 51056 42617164 ~ 42655565 (+) False LOC110519981
XR_005045604.1 mRNA downstream 51056 42617164 ~ 42663220 (+) False LOC110519981
TU292451 other upstream 2041275 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 2041275 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2825367 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 3648899 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 3892589 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 1685961 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 1954311 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3272813 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 3368011 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 3509376 46075484 ~ 46079425 (+) True G263733

Expression Profile