G259974


Basic Information

Item Value
gene id G259974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42944651 ~ 42947853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU295895
ccaaaaaagtgttaaacaaatcaacatatatcttcaatttgagattcttcaaagtagccaccatttgccctgatgacagctttttgcaccctcttggcattctctcaaccagcttcatgaggtagttacctggaatgcatttcaattttaacaggtgtgccttgttaaaagttaatttgtggaatttctttccttcttaatgcatttgagccaatcagttgtgttgtgacaaggtagagttggtatacagaagataaccctatttggtaaaagcccacgtccatattatggcaagaacagctcaaataatcaaagagaaacaacagaccattgttactttaagacatgaaggtcagtcgatGCGgagcatttcaagaactttgaatgtttcttcaagtgcagtcgcagaaaccatcaagcgctatgatgaaactggctctcatgaggaccgcacaggaatggaagactcagagttacatctgctacagaggataataTCATTAGAGTTacgagcctcagaaattgcagcccaaataaatgcttcatagagttaaagtaacagacacatctcaacatcaactgttcagaggaaactgtgtgaatcaggccttcatggttgaattgctgcaaagaaaccactactaaaggacaccaataagaagaagagtcttgcttgagccaagaaacatgagcaatggacattagaccggtggaaatctgtccttcggATTTTTGGACTCATCCACTCTGTctctgtgagacgcagagtaggtgaacggatgatttccaCATTTGTGGtacccaccatgaagcatggaggaggaggtgtgatggcgtgGTGGCGTgaaggtgctttgctggttacactgtcagtgatttatttagaattcaaggcaaacttaaccatggctaccacagcattctgcagcgatacgccatcccatctggtttgagcttagtggatTGAgcttatcatttatttttcaacaggacaatgaccaacacactaccaggctgtgtaagggctatttgaccaagaaggagagtgatggagtgctgcatcagatgaccaggcctccacaatcccctgacctcaacccaattgagatggtttgggatgagttggactgtggagtgaaggaaaagcagccaacaggggctcagcatatgtgggaactccttcaagacttcaagactgttggaaaagcattccaggtgaagctggttgagagaatgccaagcgtgtgcaaagctgtcataaaggcaaatggtggctactttgaggaatctcaaatataaaatatattttgatttgtttaacacttttttggttagaacattattccatatgtgttatttcatagtttttatgtattcactattattctgccatgtgtaaaatagtaaaaataaagaaaaatccttgaactaatagctgtgtccaaacttttgaccagtactgTATGCTGGGCACATGATGTCATCGCATTACTTTAAAGCTCCACTCCACGTTTAGTTCTAAATGCCAACTGCttggaacaacaacaaaaaatactatAAAATCAATGTTTCTTTGCAGGACAAGGATTGTCCTGACTTTCACAAAGAGGCCTGAATTGCTTTGCCTTGCTTTTCTTGCCCTGCTGGCAAGATTtaccatccaattatttcagatctacaTTAGTGTAAGTTTCACCATGGCATGGACGGTGGCAGTACGTTGGCACATGATAGTTATTATAATATGGCAAATATTAGTAAATTATTTCATTTGATCAATGTTGCTGGCTTTTGCAAGCCTACCTGAGAAAttaaacagataggtgggagggcataCTGGCTGTCGCCAAATTATTAATGCGCTATTTGCCTAAATGTGTAATAGAATCACATAAACCACATTTTATTCGACACTGTAGGTTTTTgctaaaaaaaaagttttttaggTGTGACATCACTATGTACAGCTGTTTTTATTGACACAAGATAGTTAATTGGAAACGCACCGTAACAGGCAATTGTCACATGTATTTTCTATGCAAACTTTCTAAATGTCAACAAAAAAGTCACTGGACAAGTTAAGCGAAACATAGCTGTTGACTGGCCAACTGAGGGCACTagaaggtaatatgtacatttatAGATGAACTGGATGAGGTATATTTGTACAGTAGATAAAAtggagtacagagacaaaagATGAAAAAAACCCACAAATAACACAACAGAGGAAGTGACCATTTTTAATGTTAAAATAATGATgctgatactgtagtgatgaaacaaaaattacATTTGTCTTGAGATCAAATCATATGCACTGGGTCCAATTTAGGAAGTGGTCAACTCTGTCAGTGGATGCCACACAAATGAATAGAAAAGTAGACTTTGGACACAATGTACAATGCAGACACCATGTCATGATGAATAATGTTGAGCTTAGTTTTCAGTCGCATCTTAAGTGACTGTGAAAATATGAGTTACAGTAGGGCCAAGAGAAGTGTCATCTCATGTAATGGAAACAAATCACTGTAATTAACACTGTTCAAATACCAAGCTTTTCCAGTGTTCCAGGTATTACAATGTACAGTATGAGATGAAATTGGTAAAAATGTCCTGACTGTTCTTTGACTGGATGTATTACTGTATTTTAGACTCTGACAAATCAGCTTGTGGCAGATTGTTGAAATCTGAGTTGGATGACACCCTGTATCCCTCTCCGATGAATTGAATACTGTAATACTGAACACAGCTAAGTGTCTCTCTTTTGGTTCATCTTTCAAAGTCACCTAGAAGTCTTTCTGGACTGTATTGACTCACAACGTCAATTCTACTTCATAACCTCAGCCAAGAAGCATGTTAGAGCACAAGTCAAAACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU295895 True 2880 lncRNA 0.39 2 42944651 42947853

Neighbor

gene id symbol gene type direction distance location
LOC110519992 LOC106586087 coding upstream 54 42895618 ~ 42944597 (+)
LOC110519980 nckap5 coding upstream 61329 42746657 ~ 42883322 (+)
LOC110519990 stk17b coding upstream 228823 42696546 ~ 42715828 (+)
LOC110519981 hecw2 coding upstream 262595 42616569 ~ 42682056 (+)
pgap1 pgap1 coding upstream 354285 42562140 ~ 42590366 (+)
LOC110519989 LOC106581699 coding downstream 103749 43051602 ~ 43083760 (+)
LOC110519984 LOC106586113 coding downstream 221932 43169785 ~ 43513887 (+)
LOC110519994 LOC100380648 coding downstream 883108 43830961 ~ 43845629 (+)
LOC110519995 LOC106586118 coding downstream 909236 43857089 ~ 43875820 (+)
LOC110519997 lct coding downstream 928411 43876264 ~ 43895648 (+)
G259003 NA non-coding upstream 114406 42829759 ~ 42830245 (+)
G258961 NA non-coding upstream 177948 42766499 ~ 42766703 (+)
G258877 NA non-coding upstream 330506 42612387 ~ 42614145 (+)
G258824 NA non-coding upstream 378543 42493455 ~ 42566108 (+)
G260062 NA non-coding downstream 71567 43019420 ~ 43019973 (+)
G260366 NA non-coding downstream 276994 43224847 ~ 43225135 (+)
G260375 NA non-coding downstream 288402 43236255 ~ 43236469 (+)
G260432 NA non-coding downstream 375742 43323595 ~ 43417280 (+)
G260544 NA non-coding downstream 571187 43519040 ~ 43522754 (+)
LOC110519969 LOC106586020 other upstream 2492471 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 3276563 39658753 ~ 39668297 (+)
G254816 NA other upstream 4100095 38843510 ~ 38844556 (+)
G254445 NA other upstream 4343785 38600487 ~ 38600866 (+)
G254204 NA other upstream 4502917 38441166 ~ 38441734 (+)
G261749 NA other downstream 1304216 44252069 ~ 44252551 (+)
G262037 NA other downstream 1572566 44520419 ~ 44525408 (+)
G263547 LOC106586150 other downstream 2891068 45838921 ~ 45839480 (+)
G263710 NA other downstream 2986266 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 3127631 46075484 ~ 46079425 (+)

Expression


Co-expression Network