RNA id: XM_036974120.1


Basic Information

Item Value
RNA id XM_036974120.1
length 6675
RNA type mRNA
GC content 0.53
exon number 30
gene id LOC110519981
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42616569 ~ 42682056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaggaccgagtttgggaaacgctggtctGTCCCTTTTAAGTCACCGCCCACGTTATGCTCTCCCCCATAATATAATGAAACCATATCAACAGTGAGGAGGAACGGCTCACGCATCAGCCACCATGCGTCCCTCACTCGCGGTCCTTCCCAGGACCCGTAACCATCCCcacacagcccccccccacaATGCACACGGACTGTCTGCACACGTGGGGCGGGAGCACCTGTCGGCCCCACGGAGGCGCAGCCCACACCTGCGACACACGCTCAGCCCAGAGAACCTGCGGAGCCTGGCGGAGCGAGGCGGTGCGGCCAGGGACACGGCTTCTGTGGTGAgcagccccatgggtctcccgagGGCCAACAGCGACACAGACCTGGTGACCTCGCAGGGCCGCTCGTCGCTGACTGCGTCCACACTGGAGTTCACGCTGGGGAGGGGCCAGAACCTGGTCATCTCCTGGGACATCAAGGAGGAGGTGGACGCCACCGACTGGATCGGCCTGTATCACATTGATGAAATCAGCCCATCCAATGTGTGGGACTGTAAGAACCGTGGGGTGAATGGGACACAGAGGGGCCAGATCGTCTGGAGGTTGGAGCCTGGGCCTTACTTCATGGacgCTGAGACCAAGATCTGCTTCAAGTACTATCACGGCGTCAGTGGAGCCCTGAGAGCCACCACCCCCTGCATCACTGTGAAGAACCCTGGAGTCCtgggAGAAGGTCAAAGTGAGGGGCAGTCATCCACAGATCATCCTCGCAAACTAATCAGCTTTACTTTGACAGATATGCATGCGGTGGGGCTGAAGAAGGGAATGTTCTTCAACCCGGATCCCTACCTGAAGATGTCCATCCACCCTGGGAAGAGAAGTGGCTTCCCCACCTTCAGCCACCACGGACAGGAGAGACGCTCTGCCATCATCGCCAATACCACCAACCCTAAGTGGCGCGGAGAGaaATACACTTTTGTAGCACTGATGACAGACATTCTGAACATCGAGGTGAAGGACAAGTTTGCCAAAAGTCGACCAATCATCAAACGCTTCCTTGGTCAGCTGACCATTCCTGTGCAGAGGCTGATTGAGAAAATACCTGGTCTCCAGCCTCTGAGCTTCTCTCTGTGTCGACGGTTGCCCACTGAGCACGTGAGTGGCCAGATGCAGTTCAGGGTGGAGCTCACATCCACTGGACCTGACGGGGCCTCTCCGGACTCTATCATCGGTGTGCCCAATAACGGGGCCCCTGGGACTCCATCAGATGACGAGGATCTGCCCCACCTTCTCCCGGGGGTGGTTACTGGAGGCCCCTCCCCTACTGGCTCCCTGGGCTCACAGAGGTCCTGGGAAGGCGGGGCCACAGCCTATCCAGTCCCAGACTACAGGGACTTTAGCGGTACAGAGGGCAGAACCACCGAGGGTGAATCCTACTCTGGCCCTCTACGGTTGCAGAGGTCCCTGAGCGAAGGCCTGGATGCCATCGAGGCCCCCAAGGGCCCCGGAGAGAGGCCCCTGGGCGCCGCTTCACCGAAGCTGCGCTCTAGCTTTCCCACTCACACACGTCTCAGTGCCAtgctgcacattgactcagacGAAGATGAGGAGCGCTCGGGGCCCACTGACATTTACCCGGTGCCCGGGTCCCCCCTGCTGCTCAACGGGGGTCCCGAGGGGCCTGAAGAAGAAGACGTTGTCCCAGAGCTACAGCAGGATCCTGACCCTGAGCAGCTGGAACCCAGGGTGGTGGGAGATGAACAGCTGATAGTAACGGGGGAAGATTGTGCCCCTGGTGGTGAATCCAATGTGGCCCCTGAGTTAGACCTGGCCCTCGACTTCGAGGACTCCTCAGAGCCTGATGTTTTCTCGGAGGTGGAGGAAGTTCCTTTCTTCTCAGAGGCGCTGTCCCAGAGTCTTTTGGCTGTGGGCCTGGAGGGGCCAGAGGAGGGCCAGGGGCCTGCTGACAACCCCTCGTCGCCGATTGACACCTGCTCCATGGCAATGGCCCCACAGACAGTCTTCTCTTCCTCAGAGAGTTGCCCAATCACAATGTCCACGGCTGAGgaggcagaggagagggcaGTAGCTGCCATTGACCCAGGGGGAGACTCATTCACTGGCACTCCACCCACCCACCAGCACGTAGACGACGAGGGGGGCGGGCATACGTCAGCCAATGAGGTTGAAGGAGACGCTCCGTCTGCCAATGCGCTGGAGCCAGGGGAGGAGATTAGTGAGCGGATGTGGAGCTTACAGGTATCTGGGGATGTTCcccaggatgaggaggagggggaggagccaAGACCCGCAGGGGTGGCCGTATCTGTTGATTCAGATGCAGTTGCCATGGAGGCAGATGGAGAAGACGGTGCTCAAGTGAACGGTCACCCGGTGCACTGCCTCCCCTCAGTGCGCCATGACATTCACCGTTACCAACGAGTGGATGAACCGTTACCTCCTAACTGGGAGGCGAGGATCGATAGTCACGGTCGTATTTTCTTTGTCGATCACGTGAACCGTACCACCACGTGGCAGCGCCCCACCGGACCCCCCGCTCCCCAGGGCCTGACCCGCTCCAGCTCCATCCAACAGATGGAGCAGCTCAACCGCAGATATCAGAGCATCAGGAGGACGATGACCAGTGAGAGGTCTGAGGAGAACACAGTTGACCTCCCGCCAGAGCCCACAGAGAGTGACTTTCTGCCCCAGACCATCCCTGAGTACAGGAGAGAGAGCGCAGTGGGTCACTCCAGCTCTCGGTCGcgtctctctctgctgctccaGTCCCCAAGTGCAAAGTTCCTGTGCAGCACAGACTTCTTCACCGTGCTGCATTCTAACCCTagtGCCTACAGCATGTTTACGAGCAACACCTGCCTGAAGCACATGATCAGTAAGGTGCGTCGGGATGCCCACCACTATGAGCGTTACCAGCACAATCGGGACCTGGTGGCCTTCCTCAACATGTTCACCAACAGCCAGCTGGAGCTACCCAGGGGCTGGGAGATGAAGCACGACCAGACCGGCAAGCCCTTCTTTGTGGATCACAACTGTCGCTCCACAACCTTCATCGACCCGCGGCTCCCCCTCCAGAGTGCACACTCAACTAGCCTGCTGGCCCACCGACAGCACCTTAACCGCCAACGCAGCCACAGCGCAGGCGAGGTGGTAGATGACATGCGACACTCCAGCCCACCTGTCGTGCCCTGCCCCTCCAGCACCTTCAGTGGGTCCACTCGCAATCAGGACCTGGTGCCTGTGGCCTACAACGACAAGATTGTGGCGTTTCTACGGCAACCCAACATAATTGAGATCCTGCAGGAGAGGCAGCCAGAGCTCGTCAGGAACCACTCACTCAAggaAAGGTTACAGTTCATTCGCAGTGAGGGTGTTTCTGGGCTTGCTCGTCTCTCTAGCGATGCTGATCTAGTAATTTTGCTCAGcctgttTGAAGAGGAGGTTATGTCCTATGTGCCACCTCATGCCTTACTGCACCCCAGCTACTGCTCCTCCCCTCAGAGCTCCCCCGGTACTCAGCGGGCGAATGCACGCGCCCCTGCCCCTTACAAACGTGACTTTGAGGCCAAACTGAGAAACTTCTATCGCAAGCTGGAGACGAAAGGCTATGGCCAGGGACCTGGGAAAGTCAAATTGATCATTCGTAGAGATCACCTATTGGAGGATGCCTTCAATCAGATAATGTGCTACTCCCGCAAAGATCTGCAGAGGAGTAAGCTCTACGTCAGCTTTGTGGGCGAGGAAGGGCTGGACTACAGCGGCCCCTCGAGGGAGTTCTTCTTCCTGGTGTCGAGGGAGCTGTTTAACCCTTACTACGGCCTGTTTGAGTACTCCGCCAACGACACCTACACTGTGCAGATCAGCCCCATGTCTGCCTTCGTGGACAACCATCACGAGTGGTTCCGTTTCAGTGGGCGTATCCTGGGCCTGGCTCTGATCCACCAGTATCTGCTGGATGCCTTCTTTACCCGCCCGTTCTACAAGGGCCTGCTGCGCATCCCGTGTGACCTGAGTGACCTGGAGTTCCTGGATGAGGAGTTTCACCAGAGTTTACAGTGGATGAAGGACAATGACATCGAGGACATGCTGGACCTCACCTTTACCGTCAACGAGGAAGTCTTTGGACAGatcacagagagagagctgaagcCAGGCGGGGCAGGTATTCCAGTGTCAGAGAAGAATAAGAAGGAGTACATCGAGCGTATGGTTAAGTGGCGCATCGAAAGGGGTGTGGCTCAGCAGACGGAGAGCCTGGTGCGAGGCTTCTATGAGGTGGTGGATGTGCGGCTGGTATCTGTGTTTGATGCCCGGGAGCTGGAGCTGGTGATCGCTGGCACTGCAGAGATCGACCTGGCAGACTGGAGGAACAACACAGAGTACAGAGGAGGGTACCATGACAACCACATAGTAATCCGCTGGTTCTGGGCTGCAGTGGAGAGGTTCAACAATGAGCAGAAATTGAGACTGCTGCAGTTTGTGACAGGCACCTCCAGTATTCCCTATGAGGGCTTTGCCTCCCTCAGAGGTAGCAATGGACCACGCAGGTTCTGTGTGGAGAAGTGGGGCAAAATCACCTCCTTGCCCAGGGCCCACACATGCTTTAACCGTCTGGACCTCCCGCCGTACCCGTCGTTCTCCATGCTCTACGAGAAAATGCTGACGGCCGTGGAGGAAACCAGCACCTTTGGCCTGGAGTAACCTCTCCAAAATGTCCGCCACAGCCAGGGGTTGAATTGGGTAAGAACAATGGTGGATAGGAAACCCCACCACCTTCGCTTGAGGCGAGACAGGACTCACAGTACACAATGGAGACTGAATAGACATCGACAAGAAATTATCATTGTggagaaaaaacaacaacctttGGGACAATTTCACCAACAAGATAATCCCAATTTGACCCCCTGGCTTTGCTATACCTCCCTGCTCCATGAGCCCATACTTCCTGGAATAACGTTACTGTTCTTTTACCTACACTGATGCCCTCCATTTGATTCCTGCGTACAACAACCACACTTGTGCTTTATCTCTTATCAGTTTAATGGCCTTGGTTACTGTATCTCcagtcctcctccttcctccagggGTTCAGCCTGCACTTCAAACCCAGAGAAACCTTATCCTAATCCCCTATGCTTCCTCCTGGAGTGACCTCATGTTCTGGACCTCAGAACTGTTTCATTTTCTACTCTGGGGCTGCAGACTATGCACACTATAATACATAATGAACTAATGCCTTGGCTTCGAACATACACGCTTCTAACGCACACACTTTCAAGATGACCCTCATGAGTAAGACCGTTATCATTTCTGAAGGGATTCAATTGTATGTCAGAGCTCCTAAGGGGCACCAAAGGCATTGTCATACTCCAAAACACACTGCACTTACCTTATGTTAGATTACATGAGCAAGGCTTTAAAACTGACACACACTTACGTACGGATACAATTGTAGGGTCATTCTTTTTCCAAATAGATGAGATGCACTTTCTCATAGACGCATGTAGCtccacatgcatgtacacacacacacacacacacacacacacacaaatacgcacTGAGACATTGCCAAACAAAAGGCTTTATTTCTCACTGATGTAATTTTCTCCCATTCAGTGTACTTACTGATGAATGTATCACAAAAGAGTGAACCTGTGTATGAACCTGTATGAATCTCCAGCTTGCCGTAGTAGGAAGACTGAGGAGCCTTCAAAGAAGAAGAAACACCAGAGCCGCACGAAGTGTAGCTCGTACAATTGCTGACTGTGGTTGATTGAGGAATATGGAAGCCAAGACTGTGGCATCGGACATGTGCCTTGTTATGAGAGATATGAGAGACACTTTTACTCATTGTTTTACGAAAGGATGCGTCCATTTCCTATTGGGTCACGACTGAAAACTCAGTTGTAACGAGAGACTTTGTATTGTCTATTTGGTTGTTCAAAATTACATTCAAAAAGTTTATCTGtgtcacacacaaaaaacacaacttttaaagctagaatccttagttgcttcCTACATCTATTTTTGGAcctataaatgaatgatatatacccattgattcttgaagaatataacttatacatGCATCATGAACTTAGTTCAAcagttgtaccccatcagaacccaaaatataaacttgttttactccaatgattgtaaacaatgtaaatgtaaacaaactgtatagcctcaaaacatggttaaaactgtactttttatatcatggatggtcagtccttgcatccatagctctgtatatgaatttgagaggggttacatttctccaggcccaacCCTCAGCTTtctaccaaaacagaggcggggtgcCACTTTGTTATtctttcaattaaggattctagctttaagtgTATTCCAAAACAGTTCCAGGATGCAAACACAAGAGGGCAGCACATCATATATGGGTACTTCAGTACCATCGACACAGCTATAGAAGCATTTTTAAGCATGGGGCATACACTACACACCAACACAGATGCTTACGATTTCTTGAAAGCATGTTTTCATCCTGGTTTTGGACTTCTCAGTGCATAACCCCTACCCAAAGGatttatttacacacacacatacacacacacacattttctatggggtgCACACACTACTGTACAGAGGTCTATGTGAGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294716 lncRNA upstream 2424 42612387 ~ 42614145 (+) True G258877
TU294660 lncRNA upstream 50461 42493455 ~ 42566108 (+) True G258824
TU294595 lncRNA upstream 172451 42443864 ~ 42444118 (+) True G258784
TU294492 lncRNA upstream 289397 42324471 ~ 42327172 (+) True G258682
TU294470 lncRNA upstream 374487 42241863 ~ 42242082 (+) True G258664
TU294803 lncRNA downstream 84443 42766499 ~ 42766703 (+) True G258961
TU294845 lncRNA downstream 147703 42829759 ~ 42830245 (+) True G259003
TU295895 lncRNA downstream 262595 42944651 ~ 42947853 (+) True G259974
TU295988 lncRNA downstream 337364 43019420 ~ 43019973 (+) True G260062
TU296308 lncRNA downstream 542791 43224847 ~ 43225135 (+) True G260366
XM_036974116.1 mRNA upstream 26203 42562140 ~ 42590366 (+) False pgap1
XM_036974117.1 mRNA upstream 26203 42562140 ~ 42590366 (+) True pgap1
XM_021596931.2 mRNA upstream 65948 42543621 ~ 42550621 (+) False LOC110519991
XM_036974115.1 mRNA upstream 65948 42543630 ~ 42550621 (+) True LOC110519991
XM_021596926.2 mRNA upstream 82415 42461543 ~ 42534154 (+) True LOC110519988
XM_021596930.2 mRNA downstream 14490 42696546 ~ 42715828 (+) False LOC110519990
XM_021596929.2 mRNA downstream 14784 42696840 ~ 42715803 (+) True LOC110519990
XM_021596914.2 mRNA downstream 64601 42746657 ~ 42883322 (+) False LOC110519980
XM_021596915.2 mRNA downstream 64601 42746657 ~ 42883322 (+) False LOC110519980
XM_036974128.1 mRNA downstream 87156 42769212 ~ 42883322 (+) True LOC110519980
TU292451 other upstream 2164389 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 2164389 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 2948481 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 3772013 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 4015703 38600487 ~ 38600866 (+) True G254445
TU297744 other downstream 1570013 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 1838363 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 3156865 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 3252063 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 3393428 46075484 ~ 46079425 (+) True G263733

Expression Profile