XLOC_021817 (dre-mir-205)


Basic Information

Item Value
gene id XLOC_021817
gene name dre-mir-205
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33290273 ~ 33290361 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043265
AAACTACTGTGCATTCTATCCTTCATTCCACCGGAGTCTGTGTAGTTGTTCAATCAGATTTCAGTGGTGTGAAGTGTAGGAAACACGGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081646

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043265 True 89 miRNA 0.43 1 33290273 33290361

Neighbor

gene id symbol gene type direction distance location
XLOC_021816 AL928610.1 coding upstream 171149 33119010 ~ 33119124 (+)
XLOC_021815 NA coding upstream 710839 32577050 ~ 32579434 (+)
XLOC_021814 NA coding upstream 727459 32562610 ~ 32562814 (+)
XLOC_021813 si:dkey-261h17.1 coding upstream 757661 32499916 ~ 32532612 (+)
XLOC_021812 NA coding upstream 802547 32480330 ~ 32487726 (+)
XLOC_021818 si:ch211-226m16.3 coding downstream 4272 33294633 ~ 33309622 (+)
XLOC_021819 rapgef3 coding downstream 90793 33381154 ~ 33444055 (+)
XLOC_021820 NA coding downstream 165202 33455563 ~ 33459265 (+)
XLOC_021821 CT027694.1 coding downstream 247690 33538051 ~ 33538169 (+)
XLOC_021822 dazap2 coding downstream 428241 33718602 ~ 33729552 (+)
XLOC_021807 NA non-coding upstream 1037196 32250356 ~ 32253077 (+)
XLOC_021824 CR354542.1 non-coding downstream 469386 33759747 ~ 33760665 (+)
XLOC_021826 CR381531.1 non-coding downstream 538304 33828665 ~ 33830190 (+)
XLOC_021831 NA non-coding downstream 688350 33978711 ~ 33983432 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_03865986_03866675 NA misc CI01000001 null 3865357 ~ 3867469 (+)
rainbow trout (Oncorhynchus mykiss) G1479977 LOC106565879 non-coding NC_048581.1 CM023235.2 68485990 ~ 68489612 (-)
eurasian perch (Perca fluviatilis) G48765 NA unknown NC_053116.1 CM020913.1 11314662 ~ 11315992 (+)
mexican tetra (Astyanax mexicanus) G12421 NA non-coding NC_035898.1 CM008301.1 21648352 ~ 21648643 (+)