G226188


Basic Information

Item Value
gene id G226188
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13180988 ~ 13181809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU258731
CAAAatacagcaacaaaaaaaaaagactgaCAAACGTCTATTATGGTTCGCTGTTCGAAAGTTGTCGTATGTCGCTGGAAAAAAACATTGTACGCGGAAGTACAAATTCAAGTGCACAATTTCCCCTTGCCTGATTATTTTATCTGCATAAACCACTGGCAAAGTAATACATGACGATGTCAAAATATATTGGTTTGATGTAATAATACAGTTTTCAATATGATCTAGCTATATAAAATCTGGTTTTCATGTAACTTTTTCCATCCCCAGTTGTTTCCTGATGGGCTACCATACTAGATTGTGT
>TU258732
GTCATGTTGAAATACTCGTAAAAAAATACATAGGCAAGCAAATCATTGCACGTAGGCCTGGCCACATTGCTGGCAATAACTGctatagttacagagttacatTAAATAATAGGCTACAATGTTGCGAGTCATTTTACAATTATGCTCTTTGCAACATTTTTGTAACATGACGGATAGCGATACTTTGTAGCCTGCTAAAAAATATCACACGTACCCTTCAAATACCAGTATGCTTCAGCAAGTCCTACTCTGTAATGAAAATAGTGTTTAATTAACTCTAAAACACCTGATTTTGGGACTCGAGAGAACGAGATGTTCCGCTAGACTGTAGCCAAACACAACATTCCTTTAGCTAGACGTTAACTAAAGGCTGTCTGGTGAGCTGGCTAGCGAGAGACAAGCCTTTACTCGCGGAATAACCTCATTAAATCCCAAGTTTTTTTTTATAAGTAACTAAGCATCGAACGTATGTACATGTTAATATATATTATCAAAATGTTTCAACGAGGTACTCACCTCAAAatacagcaacaaaaaaaaaagactgaCAAACGTCTATTATGGTTCGCTGTTCGAAAGTTGTCGTATGTCGCTGGAAAAAAACATTGTACGCGGAAGTACAAATTCAAGTGCACAATTTCCCCTTGCCTGATTATTTTATCTGCATAAACCACTGGCAAAGTAATACATGACGATGTCAAAATATATTGGTTTGATGTAATAATACAGTTTTCAATATGATCTAGCTATATAAAATCTGGTTTTCATGTAACTTTTTCCATCCCCAGTTGTTTCCTGATGGGCTACCATACTAGATTGTGT
>TU258729
CAAAatacagcaacaaaaaaaaaagactgaCAAACGTCTATTATGGTTCGCTGTTCGAAAGTTGTCGTATGTCGCTGGAAAAAAACATTGTACGCGGAAGTACAAATTCAAGTGCACAATTTCCCCTTGCCTGATTATTTTATCTGCATAAACCACTGGCAAAGTAATACATGACGATGTCAAAATATATTGGTTTGATGTAATAATACAGTTTTCAATATGATCTAGCTATATAAAATCTGGTTTTCATGTAACTTTTTCCATCCCCAGTTGTTTCCTG

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU258731 False 304 lncRNA 0.31 1 13180988 13181291
TU258732 False 822 lncRNA 0.36 1 13180988 13181809
TU258729 True 280 lncRNA 0.41 1 13181012 13181291

Neighbor

gene id symbol gene type direction distance location
cxcr3.1 cxcr3b coding downstream 251924 12925454 ~ 12929064 (-)
LOC110503616 LOC106605556 coding downstream 297972 12880885 ~ 12883016 (-)
tlr21 LOC106605556 coding downstream 305300 12864942 ~ 12875688 (-)
LOC110509927 LOC106578751 coding downstream 320399 12856694 ~ 12860589 (-)
LOC110509869 NA coding downstream 417007 12761519 ~ 12763981 (-)
LOC110510146 mrpl17 coding upstream 157384 13339193 ~ 13341845 (-)
LOC110510138 trp-ii coding upstream 164300 13346109 ~ 13347872 (-)
LOC110503661 trp-i coding upstream 178073 13359882 ~ 13360962 (-)
LOC110510120 LOC106577461 coding upstream 195046 13376855 ~ 13378759 (-)
LOC110510106 LOC106577440 coding upstream 206600 13388409 ~ 13410671 (-)
G226126 NA non-coding downstream 112394 13068294 ~ 13068594 (-)
G226123 NA non-coding downstream 121821 13058934 ~ 13059167 (-)
G226106 LOC106578882 non-coding downstream 144419 13034573 ~ 13036569 (-)
G226065 LOC106605724 non-coding downstream 195196 12972558 ~ 12985792 (-)
G226067 NA non-coding downstream 209165 12971101 ~ 12971823 (-)
G226208 NA non-coding upstream 6090 13187899 ~ 13188419 (-)
G226209 NA non-coding upstream 6980 13188789 ~ 13189160 (-)
G226210 NA non-coding upstream 9111 13190920 ~ 13194671 (-)
G226215 arhgef1 non-coding upstream 21535 13203344 ~ 13205132 (-)
G226214 NA non-coding upstream 24263 13206072 ~ 13207814 (-)
G226187 NA other downstream 716 13177178 ~ 13180272 (-)
G226124 NA other downstream 113631 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 707928 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 723197 12454388 ~ 12457791 (-)
G225099 NA other downstream 840022 12336241 ~ 12340966 (-)
G226224 NA other upstream 42075 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 162265 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 744865 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 817927 13995196 ~ 14023153 (-)
G227060 NA other upstream 1246984 14428793 ~ 14475166 (-)

Expression


Co-expression Network