XLOC_021949


Basic Information

Item Value
gene id XLOC_021949
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41241241 ~ 41253223 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044698
CTTTACTACATCGGTGCTCCCCCGGTTACTTTGAGTTGGTATCAGCCGACTGAAGTGGGAGGTATAAACATCCACTGCGACTCGCTTCAAACCGTTTGCCAGTGACCGCGGAGATGGAGGACATGTGTTCTCCACGCCACCTCATAGCAACCTAGACCCAAACAAGGATAAAAGATAAAGAAACATCCTTCGACGAAAACAatacaacacgtttccttgtAATTCATCTTGAAGAGTGAAGTATAGAGTTCCCACAGGTCATGGAATATTAGAAGTGATGCGTCCAGACAGCGAGAGAAGCAGTGACGTCTGACCCTCCAGCTCCTCCTTGTACTCCTCATACTGCAGGATCCACTCCAGAGActgaactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcagcattACAACTTCAGCACAAAATATCCAGTTACTGAATTACATCAAGTTTTATTTATACACTTTTGAAATActtatttgaatattatttagttttagaGATGTCGTTGTGTGCATTAAAAGAGTTTTTGCTTGCAGTGTCTCTCTTTATTTGGTTTGGTCTAGATTTACAAGTGTACAACACTATATGACTCACTTCAGTGTTATTTATGCACTCTTAGGTCAACAAGACATTAGAATAAAAGTTCTACACactttttttgtctaataaaaagaaaacatccaaaagaaattagtttatcatGTCACAATGGATATTGataacaatacatatttttt
>TCONS_00044901
CGGAGATGGAGGACATGTGTTCTCCACGCCACCTCATAGCAACCTAGACCCAAACAAGGATAAAAGATAAAGAAACATCCTTCGACGAAAACAatacaacacgtttccttgtAATTCATCTTGAAGAGTGAAGTATAGAGTTCCCACAGGTCATGGAATATTAGAAGATTGACCACTACAAAAACTGGGTGTTAAAAGTAGATGAAAAGCTTCTATGGAGCTATCAGATGTGGGAGGGAGAAATTCACAACCACACAAAAACATGATGCGTCCAGACAGCGAGAGAAGCAGTGACGTCTGACCCTCCAGCTCCTCCTTGTACTCCTCATACTGCAGGATCCACTCCAGAGActgaactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcagcattACAACTTCAGCACAAAATATCCAGTTACTGAATTACATCAAGTTTTATTTATACACTTTTGAAATActtatttgaatattatttagttttagaGATGTCGTTGTGTGCATTAAAAGAGTTTTTGCTTGCAGTGTCTCTCTTTATTTGGTTTGGTCTAGATTTACAAGTGTACAACACTATATGACTCACTTCAGTGTTATTTATGCACTCTTAGGTCAACAAGACATTAGAATAAAAGTTCTACACactttttttgtctaataaaaagaaaacatccaaaagaaattagtttatcatGTCACAATGGATATTGataacaatacatatttttt
>TCONS_00044699
CGGAGATGGAGGACATGTGTTCTCCACGCCACCTCATAGCAACCTAGACCCAAACAAGGATAAAAGATAAAGAAACATCCTTCGACGAAAACAatacaacacgtttccttgtAATTCATCTTGAAGAGTGAAGTATAGAGTTCCCACAGGTCATGGAATATTAGAAGATTGACCACTACAAAAACTGGGTGTTAAAAGTAGATGAAAAGCTTCTATGGAGCTATCAGATGTGGGAGGGAGAAATTCACAACCACACAAAAACAGGATCATGGAAATTCAGCTTCTCTGTGCAAGTCAGGGAATTTGTTACAGTATTTATCCTAAATGATGCGTCCAGACAGCGAGAGAAGCAGTGACGTCTGACCCTCCAGCTCCTCCTTGTACTCCTCATACTGCAGGATCCACTCCAGAGActgaactacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcagcattACAACTTCAGCACAAAATATCCAGTTACTGAATTACATCAAGTTTTATTTATACACTTTTGAAATActtatttgaatattatttagttttagaGATGTCGTTGTGTGCATTAAAAGAGTTTTTGCTTGCAGTGTCTCTCTTTATTTGGTTTGGTCTAGATTTACAAGTGTACAACACTATATGACTCACTTCAGTGTTATTTATGCACTCTTAGGTCAACAAGACATTAGAATAAAAGTTCTACACactttttttgtctaataaaaagaaaacatccaaaagaaattagtttatcatGTCACAATGGATATTGataacaatacatatttttt
>TCONS_00044697
GTGTTCTCCACGCCACCTCATAGCAACCTAGACCCAAACAAGGATAAAAGATAAAGAAACATCCTTCGACGAAAACAatacaacacgtttccttgtAATTCATCTTGAAGAGTGAAGTATAGAGTTCCCACAGGTCATGGAATATTAGAAGCCCTACTCTTACCCATAGTGGATGGTTTTGACGTGCTGCAGTCCCAGTCCCTCCATCCGGAAGATGACGTTTCTCAGCACAGAGACCAGTGGATTCTGGAACTTGAGTTTGACTTTCAGCTCTTGGCCCACCACAGCATCACCTACAGGCTGAGAGAGAGCATTGCAGACCACACATTAAGAGCACAGTTCACCCCAAACAAGAAAAAGACAAAT
>TCONS_00044700
GTGTTCTCCACGCCACCTCATAGCAACCTAGACCCAAACAAGGATAAAAGATAAAGAAACATCCTTCGACGAAAACAatacaacacgtttccttgtAATTCATCTTGAAGAGTGAAGTATAGAGTTCCCACAGGTCATGGAATATTAGAAGGAAGGCTTTGTGGTGTTCAGTGTAGTCCACGGCCTCCACACGGCTCTGGAGATCCACAGTCCGAGCAGAGCTGCTCCTGTTCTTCAGCACGATGAACAACACGGCGTCCTGACCCAAACACGCTCCACTGTCCTCCATCACCACATCTACTGTCACGTCTGCTCCTGCTGCATTACTACTTccactactactgctgctgctgctactactactgttgctgctgctgctgctactactactgttgctgctgctgttactactgctgctactactactactgttgctgctgctgctgctgttactactgctgctactactactactactgttgctgctGCTTCTGGGCAAgtagatggagcgcttggagcCGAAACTACAGGCTGCTTCCACTGCGCTGCGCTCCTCTGAAGAGCCTGATGAAGGAGACACAGCACACACTTAATTTGTG
>TCONS_00044902
CTCCACGCCACCTCATAGCAACCTAGACCCAAACAAGGATAAAAGATAAAGAAACATCCTTCGACGAAAACAatacaacacgtttccttgtAATTCATCTTGAAGAGTGAAGTATAGAGTTCCCACAGGTCATGGAATATTAGAAGGCTTTGTGGTGTTCAGTGTAGTCCACGGCCTCCACACGGCTCTGGAGATCCACAGTCCGAGCAGAGCTGCTCCTGTTCTTCAGCACGATGAACAACACGGCGTCCTGACCCAAACACGCTCCACTGTCCTCCATCACCACATCTACTGTCACGTCTGCTCCTGCTGCATTACTACTTccactactactgctgctgctgctactactactgttgctgctgctgctgctactactactgttgctgctgctgttactactgctgctactactactactgttgctgctgctgctgctgttactactgctgctactactactactactgttgctgctGCTTCTGGGCAAgtagatggagcgcttggagcCGAAACTACAGGCTGCTTCCACTGCGCTGCGCTCCTCTGAAGAGCCTGATGAAGGAGACACAGCACACACTTAATTTGTG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0001708 cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0000478 endonucleolytic cleavage involved in rRNA processing biological_process
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0007379 segment specification biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0000578 embryonic axis specification biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0032525 somite rostral/caudal axis specification biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0034511 U3 snoRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044698 False 771 lncRNA 0.39 3 41241241 41251123
TCONS_00044901 False 759 lncRNA 0.37 4 41241349 41251123
TCONS_00044699 False 821 lncRNA 0.37 5 41241349 41251123
TCONS_00044697 False 366 lncRNA 0.45 3 41241365 41249410
TCONS_00044700 False 599 lncRNA 0.50 3 41241365 41253223
TCONS_00044902 True 590 lncRNA 0.50 3 41241370 41253223

Neighbor

gene id symbol gene type direction distance location
XLOC_021948 nhsa coding upstream 12047 41200854 ~ 41229194 (+)
XLOC_021947 CABZ01056826.1 coding upstream 41919 41187230 ~ 41199322 (+)
XLOC_021945 CABZ01056843.1 coding upstream 86102 41021511 ~ 41155139 (+)
XLOC_021946 NA coding upstream 175643 41065152 ~ 41065598 (+)
XLOC_021944 NA coding upstream 222015 41005032 ~ 41019226 (+)
XLOC_021950 NA coding downstream 53832 41307055 ~ 41309447 (+)
XLOC_021951 CU914487.1 coding downstream 426363 41679586 ~ 41692463 (+)
XLOC_021952 NA coding downstream 509346 41762569 ~ 41763164 (+)
XLOC_021953 pdyn coding downstream 546525 41799748 ~ 41802335 (+)
XLOC_021954 scp2b coding downstream 578001 41831224 ~ 41854104 (+)
XLOC_021941 NA non-coding upstream 374715 40858200 ~ 40866526 (+)
XLOC_021956 NA non-coding downstream 685878 41939101 ~ 41950026 (+)
XLOC_021957 NA non-coding downstream 749472 42002695 ~ 42075952 (+)
XLOC_021959 CABZ01049773.1 non-coding downstream 938016 42191239 ~ 42191353 (+)

Expression


Co-expression Network