XLOC_021953 (pdyn)


Basic Information

Item Value
gene id XLOC_021953
gene name pdyn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41799748 ~ 41802335 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043451
AAGAGCAAACCGTGGATGGATAACGAGTGACTCCAGCAAAAGACAGGAGAACAAAGAAGTTTCCCCAAGTGATCGCCTTGACGCTTGGAGAACGAGATAAGCTCTGTAGGTAATCAAGGAATCACTGTCGATGATGGAGTGGTATGTGTTGGTGTTGATGCTGAGCTTTCCAACCTTGAGCCAGGCAGATTGTTCAGCGCAATGCCTGAGATGCGCGCAACAGATCTCCGATTTGGACTCTGCGGTGAACCGCTTGACTTGTACTTTAGAGTGTGAAGGAGCCGTTCCGCCTACCGGTACACTTGACAGATGTGAGAAGGCTTTACAGGGGCTTTCAGATGATTTAGCGGAGCTCAATACAGGCGCAGACGGAGAAACAAACGCGTTAAACACAGATGAGGACCTCCAAGAGAAGACCTCCAACCTGGTAAAACGATACGGGGGATTCATCAAGAGGATCGACaagaataaaaataagtttt
>TCONS_00043452
TCGCACCACAGGAATCACTGTCGATGATGGAGTGGTATGTGTTGGTGTTGATGCTGAGCTTTCCAACCTTGAGCCAGGCAGATTGTTCAGCGCAATGCCTGAGATGCGCGCAACAGATCTCCGATTTGGACTCTGCGGTGAACCGCTTGACTTGTACTTTAGAGTGTGAAGGAGCCGTTCCGCCTACCGGTACACTTGACAGATGTGAGAAGGCTTTACAGGGGCTTTCAGATGATTTAGCGGAGCTCAATACAGGCGCAGACGGAGAAACAAACGCGTTAAACACAGATGAGGACCTCCAAGAGAAGACCTCCAACCTGGTAAAACGATACGGGGGATTCATCAAGAGGATCGACaagaataaaaataagtttttctCTTCACCCTGGAAAGAGAACGCCATACTGAAAGGACTGTTCGCGAAGAAATACGGAGAATCTCTGTCGAAACTGGGCGAGCGAGACCTACCGTCGATAACGGAAGACGACGAGGGCGAAGATATGGGGGCGGAAAACGAAACGGGAGTTTACGATAATGAAGTTCCATTAAACGAAGTCAAACGTTACGGCGGGTTTCTTCGCAAATTCGGTCCAAAACGAAGCTACTTCGTGGATGACACCAACCCACAGGTGTTACAGAAGAGATATGGTGGTTTTATGAGAAGAATTCGTCCTAAGTTGAGGTGGGACAACCAAAAGCGATATGGCGGGTTTTTACGACGCCATTTCAAAATCTCCGTGCGCTCTGACGAAGAGCCCTCATCGTACGAGGACTATGCTTTATAGGCTGTTGTATCATTGATAACTCAACTAGAACTCATTTTTGCCAGTGTATTCCAGTTGTTTCCACCTTGATCTTACGCGTGTTGAGGCTGTTTTACTATCCCCAAATGGCTGCTGACTTCTGAACGCCGTCAATCACCTGTCGACCTGTAAATCATGTGCTCTGCAACACAATAtatcatggcaattcgtaactgcTTTTTAGGTTTTGGTGAATTAGTGGATATATTTGTATGACCAGCTCGCTCTTTTTTTGTAGATATTTtcctatgaattagccactaagtcaTCAAAACCTAAAATAGCACCCGTTGACTTTTCCCCATATGTAAGCAATCAATACATACTGCAGAAAATGCTTGTTTAAGATGACCAATAAAGGGCAAAAAAGTTTACCTGCTAAAA

Function

symbol description
pdyn Enables opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in brain and hypothalamus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 23 and temporal lobe epilepsy. Orthologous to human PDYN (prodynorphin).

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007600 sensory perception biological_process
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043679 axon terminus cellular_component
GO:0031628 opioid receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko05030 Cocaine addiction
ko05031 Amphetamine addiction
ko05034 Alcoholism
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-060417-1 Enables opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in brain and hypothalamus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 23 and temporal lobe epilepsy. Orthologous to human PDYN (prodynorphin).

Ensembl:

ensembl_id ENSDARG00000087798

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043451 False 482 mRNA 0.48 3 41799748 41801523
TCONS_00043452 True 1187 mRNA 0.45 2 41800052 41802335

Neighbor

gene id symbol gene type direction distance location
XLOC_021952 NA coding upstream 36584 41762569 ~ 41763164 (+)
XLOC_021951 CU914487.1 coding upstream 107285 41679586 ~ 41692463 (+)
XLOC_021950 NA coding upstream 490301 41307055 ~ 41309447 (+)
XLOC_021949 NA coding upstream 546525 41241241 ~ 41253223 (+)
XLOC_021948 nhsa coding upstream 570554 41200854 ~ 41229194 (+)
XLOC_021954 scp2b coding downstream 28889 41831224 ~ 41854104 (+)
XLOC_021955 podn coding downstream 86758 41889093 ~ 41931897 (+)
XLOC_021956 NA coding downstream 136766 41939101 ~ 41950026 (+)
XLOC_021957 NA coding downstream 200360 42002695 ~ 42075952 (+)
XLOC_021958 SHISAL2A coding downstream 329174 42131509 ~ 42148683 (+)
XLOC_021947 CABZ01056826.1 non-coding upstream 600426 41187230 ~ 41199322 (+)
XLOC_021945 CABZ01056843.1 non-coding upstream 644609 41021511 ~ 41155139 (+)
XLOC_021959 CABZ01049773.1 non-coding downstream 388904 42191239 ~ 42191353 (+)
XLOC_021960 NA non-coding downstream 389491 42191826 ~ 42192488 (+)
XLOC_021964 cyp2aa6 non-coding downstream 513730 42316065 ~ 42330488 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000192_00341913_00344581 PDYN coding CI01000192 null 341913 ~ 344854 (+)