RNA id: TCONS_00043451


Basic Information

Item Value
RNA id TCONS_00043451
length 482
RNA type mRNA
GC content 0.48
exon number 3
gene id XLOC_021953
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41799748 ~ 41802335 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAGCAAACCGTGGATGGATAACGAGTGACTCCAGCAAAAGACAGGAGAACAAAGAAGTTTCCCCAAGTGATCGCCTTGACGCTTGGAGAACGAGATAAGCTCTGTAGGTAATCAAGGAATCACTGTCGATGATGGAGTGGTATGTGTTGGTGTTGATGCTGAGCTTTCCAACCTTGAGCCAGGCAGATTGTTCAGCGCAATGCCTGAGATGCGCGCAACAGATCTCCGATTTGGACTCTGCGGTGAACCGCTTGACTTGTACTTTAGAGTGTGAAGGAGCCGTTCCGCCTACCGGTACACTTGACAGATGTGAGAAGGCTTTACAGGGGCTTTCAGATGATTTAGCGGAGCTCAATACAGGCGCAGACGGAGAAACAAACGCGTTAAACACAGATGAGGACCTCCAAGAGAAGACCTCCAACCTGGTAAAACGATACGGGGGATTCATCAAGAGGATCGACaagaataaaaataagtttt

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007600 sensory perception biological_process
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043679 axon terminus cellular_component
GO:0031628 opioid receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko05030 Cocaine addiction
ko05031 Amphetamine addiction
ko05034 Alcoholism
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-060417-1 Enables opioid receptor binding activity. Predicted to be involved in chemical synaptic transmission; neuropeptide signaling pathway; and sensory perception. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in brain and hypothalamus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 23 and temporal lobe epilepsy. Orthologous to human PDYN (prodynorphin).

Ensembl:

ensembl_id ENSDART00000144257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044701 lncRNA upstream 36584 41762569 ~ 41763164 (+) True XLOC_021952
TCONS_00044903 lncRNA upstream 490301 41307055 ~ 41309447 (+) True XLOC_021950
TCONS_00044700 lncRNA upstream 546525 41241365 ~ 41253223 (+) False XLOC_021949
TCONS_00044902 lncRNA upstream 546525 41241370 ~ 41253223 (+) True XLOC_021949
TCONS_00044699 lncRNA upstream 548625 41241349 ~ 41251123 (+) False XLOC_021949
TCONS_00044904 lncRNA downstream 137578 41939101 ~ 41949669 (+) False XLOC_021956
TCONS_00043456 lncRNA downstream 137607 41939130 ~ 41950026 (+) True XLOC_021956
TCONS_00044905 lncRNA downstream 201172 42002695 ~ 42075952 (+) True XLOC_021957
TCONS_00044906 lncRNA downstream 390303 42191826 ~ 42192488 (+) True XLOC_021960
TCONS_00044907 lncRNA downstream 723485 42525008 ~ 42576879 (+) True XLOC_021973
TCONS_00043450 mRNA upstream 107285 41679586 ~ 41692463 (+) True XLOC_021951
TCONS_00043449 mRNA upstream 570554 41200854 ~ 41229194 (+) True XLOC_021948
TCONS_00043443 mRNA upstream 802968 40951443 ~ 40996780 (+) True XLOC_021943
TCONS_00043442 mRNA upstream 861281 40908583 ~ 40938467 (+) True XLOC_021942
TCONS_00043439 mRNA upstream 1054897 40604951 ~ 40744851 (+) False XLOC_021938
TCONS_00043453 mRNA downstream 29701 41831224 ~ 41854104 (+) True XLOC_021954
TCONS_00043454 mRNA downstream 87570 41889093 ~ 41914681 (+) False XLOC_021955
TCONS_00043455 mRNA downstream 110628 41912151 ~ 41931897 (+) True XLOC_021955
TCONS_00043457 mRNA downstream 329986 42131509 ~ 42148683 (+) True XLOC_021958
TCONS_00043459 mRNA downstream 453437 42254960 ~ 42259295 (+) True XLOC_021961
TCONS_00043441 other upstream 1046930 40752704 ~ 40752818 (+) True XLOC_021939
TCONS_00043438 other upstream 1319166 40477220 ~ 40480582 (+) True XLOC_021936
TCONS_00043437 other upstream 1327660 40466502 ~ 40472088 (+) True XLOC_021935
TCONS_00043431 other upstream 1493377 40306244 ~ 40306371 (+) True XLOC_021932
TCONS_00043391 other upstream 3463864 38335760 ~ 38335884 (+) True XLOC_021913
TCONS_00043458 other downstream 389716 42191239 ~ 42191353 (+) True XLOC_021959
TCONS_00043464 other downstream 514542 42316065 ~ 42330488 (+) True XLOC_021964
TCONS_00043476 other downstream 701042 42502565 ~ 42502690 (+) True XLOC_021972
TCONS_00043477 other downstream 723469 42524992 ~ 42545825 (+) False XLOC_021973
TCONS_00043478 other downstream 803421 42604944 ~ 42605059 (+) True XLOC_021975

Expression Profile

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