XLOC_021955 (podn)


Basic Information

Item Value
gene id XLOC_021955
gene name podn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 41889093 ~ 41931897 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043454
CTGCTGGAGCTCATGTGTTTGCTTTTGCTGGGCTGGACTCTGATTGTTCGCGGTCAGACAGAAACCGATCTCCACCTGCTGGATGAAGAGGAAGCAGAGGAGGTGAAAAATGCAGAGGAAAAGGTATCCTGTCCGGAGAAATGCAGCTGCAGCGGCGAGGGGGCGGTGGATTGTAATGGAGTGAGTCTCTCTGAATTCCCGCAGGATTTATCTGAACAGACCCGGCAGCTCTCACTACAGAATAACCAGATCAGCGAGGTCACGCTGGAACATCTGTCCCGTCTTCAGCAGTTGGAGACCCTCAATCTACAGAACAACCGGCTCACAACACAAGgccTTGAGGACGAAGGGTTTGATATTCTGGAAAGGCTGAGCTATTTATACTTGGCCAATAATAAACTCACCGCAGCTCCCAGACACCTTCCTCCATCTTTGGTCAGCGCAGATTTTGCCGCTAACCAGCTCACCAAAATCTTCCCCAACACGTTTGGCCAGAAGCCTGCACTAAAGTCAGTGTATCTCCATAACAACAAGCTAACGGATGCCGGTCTGCCAGAGAGCATGTTTAATGGATCAGACAGCCTTGAGATCCTCATTATGTCCAGTAATTTTCTCCGTTATGTCCCAAAGTATCTGCCCACTGCCCTCTACCGCCTACATCTGAAGaACAACAAGCTGGAGAAGATTCCCTCAGGGGCATTTGATAATTTATTCCATCTTCGAGAACTTTACCTGCAAAACAACTTCCTGAGTAATGATGGCATGGACAACGAGACCTTTAGCCATTTGAACAGTCTGGAATATCTGGATTTGTCCAATAACAACTTGTCCACAGTTCCCCTCGGGCTTCCCCGAAATGTTATCCTGCTTCACCTAGAGAAGAATTCAATCCAGAGCATTGCAGTAAATGCTCTGTCACCCATTCGAAACCTGGAGTACTTACTCCTCCACAACAACCGCCTCCGTTCCCGCTCCATCCATCCAGCTGCCTTCCAGGGTCTGAAACGCCTCCACACCGTCCACATGTACAACAACCTTCTCGAGCGAGTTCCCCGCGGCCTTCCTCGTCGAGCAAAAACCCTCATGCTGCTCCATAACCTCATCAGTGAGATTGGACGCAACGATCTGATCACACTTTACACCCTCACAGAGCTCAACCTCAGTTACAACCGCCTCACAAGCGCCAAGCTCCACCGAGAGGCCTTCAGGAAACTCAGAATCCTGGAGACCCTGGATCTGTCAGGAAACAAGTTGCAGGCACTGCCACTGGGTCTTCCCAAAAGTCTCCAAATCCTGAAGGTAAAGGACAACCAGATGACAGAGATACCAGAAGGGGCTCTGCTGGGAATGACCTCGCTGAGGGAGCTCTACCTGACCAACAACCAGCTCAAGCTCAGCTCCATCTACCAGGGTGCGTGGCTAGAAATGAATGCCCTCAAGACACTGGATCTCTCTGGTAACATGCTGTCTCACATTCCCCCTGACCTACCCGAGTCTCTTGAGTTCCTTCACCTGCAGAACAACAGAATCAACTCTATTTCAGAAACAGCCTTCCTCAACACACCCAACATCAAAGGAATATTCCTCAGGTGA
>TCONS_00043455
ATGGTCTCTCTGCTGTGCTTCAGGTCAGTGTATCTCCATAACAACAAGCTAACGGATGCCGGTCTGCCAGAGAGCATGTTTAATGGATCAGACAGCCTTGAGATCCTCATTATGTCCAGTAATTTTCTCCGTTATGTCCCAAAGTATCTGCCCACTGCCCTCTACCGCCTACATCTGAAGaACAACAAGCTGGAGAAGATTCCCTCAGGGGCATTTGATAATTTATTCCATCTTCGAGAACTTTACCTGCAAAACAACTTCCTGAGTAATGATGGCATGGACAACGAGACCTTTAGCCATTTGAACAGTCTGGAATATCTGGATTTGTCCAATAACAACTTGTCCACAGTTCCCCTCGGGCTTCCCCGAAATGTTATCCTGCTTCACCTAGAGAAGAATTCAATCCAGAGCATTGCAGTAAATGCTCTGTCACCCATTCGAAACCTGGAGTACTTACTCCTCCACAACAACCGCCTCCGTTCCCGCTCCATCCATCCAGCTGCCTTCCAGGGTCTGAAACGCCTCCACACCGTCCACATGTACAACAACCTTCTCGAGCGAGTTCCCCGCGGCCTTCCTCGTCGAGCAAAAACCCTCATGCTGCTCCATAACCTCATCAGTGAGATTGGACGCAACGATCTGATCACACTTTACACCCTCACAGAGCTCAACCTCAGTTACAACCGCCTCACAAGCGCCAAGCTCCACCGAGAGGCCTTCAGGAAACTCAGAATCCTGGAGACCCTGGATCTGTCAGGAAACAAGTTGCAGGCACTGCCACTGGGTCTTCCCAAAAGTCTCCAAATCCTGAAGGTAAAGGACAACCAGATGACAGAGATACCAGAAGGGGCTCTGCTGGGAATGACCTCGCTGAGGGAGCTCTACCTGACCAACAACCAGCTCAAGCTCAGCTCCATCTACCAGGGTGCGTGGCTAGAAATGAATGCCCTCAAGACACTGGATCTCTCTGGTAACATGCTGTCTCACATTCCCCCTGACCTACCCGAGTCTCTTGAGTTCCTTCACCTGCAGAACAACAGAATCAACTCTATTTCAGAAACAGCCTTCCTCAACACACCCAACATCAAAGGAATATTCCTCAGGTTTAATCGCCTCTCAGTTAATTCAGTATCTGAAGAGACGTTCGCTCATCTGTCTAAGCTGCGGGTGCTAGACATTGGTCACGGAAACATTTCTCCCAACCGAGGCCAAGCCGGAGACAATatggaggaagaagaggaggaattAACACAAGAGGAAGAGGAGACACAGCCTTGAGTCAGAAACACGtgaaaaacagtaaataaataaacaagtaatgcCCTGAATCTCCCTGCACTCTcaaagaaattaaaacatttgtattgGTAAATGCACCGTGGCTGCTGACGAGATTATTTCCATTGACTGATTACATGCTAGCAAAATGGTAAAGCTAATTATTTACGTATAAAAGAAACATGCTAGCTAGCTAAACGCTAATTCATGTTAACAACAATATGCTAAGCATGCAACCAACACAACGACAAGCTGATTCATGCTAGCATCTTAAAACATGGTAAACATGAAAGCATAGACGTGTTAGAATTGTGATAGCAATGCTAACGTTAAAATCTGCTAACAACATATTGATGTTAAATGATAGCAGTGATGTGTTTTATTATAGTAGGATTGATTAATACAGTGTTGGAACATGCTATTTCTATTGACTGATTACATTTTTACACATCCctgttgaaaaatccagcttagaccagcctaggctggtttaagctggatttttcagcagtgaGTGGGTGATATTTTTACACATGAAACAGGAAAGTGCTAATTGTGCTAGGCTACTACTAATTTCTAAAGTCTTTTCTTTTGCTTCAAAATCTAGCTTCCCAggtaaaaatgtagtatttggcccagatgttaataactgatatGTGGGCCTTGTAAGtttgtcttgacccacatttaaaatacattattttcaaataaaaataaaaaattctaccaGTCAGGTCACTTCAAGGAAACCCCCATAGCACGCCCAAAGCTcaatgattcatgggtttatcaaattcattgcagtcatgacacaccaacaGTTCAGGCCCAATTAACTTGGCTAAGACTTGGCCCAGATTTGGTCCGTGTTTTGGCCATgtttgtctggaagccagacttggtccagtcatgtgctgtaattcactgcggcatgtgggccaagcaaaagctgatttagTGGGCCAGAGCCgtgccagagatattttgctatgtgtaGTTGTATTGTAATATAATGCAGTAAGGATGGAAAAGCCatacatgctttaaaaaaagatcTGGTGCAGGATACCGGAAAGTTTTATTggtttgcttttcattttttggtttatttttgtgGTGTTTCCTCATTCATGTCTCGTTGCTCATTATGTTGTTTACATGTATGAAACTGTTCTGTGctatgaaatattttgttttaatattcagAAGCAAGCCTTACATGGATTTTTGTCTTCTGTAATGGAAGAATCCACTGAAAATATGTATTCAGTCTTTTTAAGTGggaattaaatttaattagaaatgcttcatttttattaaaaacattgttcATCAGTGCAAAACACTATATGGGTTTATCGATTGTttattgattatatatatttttgttgttgttttcacaaATCTATTGATGTATGTATTCAAAAGATTTGTAGCACATGTGTAAATTTGGTAATTGTGCTTTGTGAATGACACAAATGAAAAGGAcaaaaatacactcactggccactttattaggtacaccttactaatacagGGTTGAACCCTGTTTTGCCTTTAAAATTGCTTTAATTCTTCGTGGTATAGACTCAACGAggtcctggaaatattcctcagagattttgctccatattgacatgatagcatcacgcagttcctgcagatttgtcggctgcacatccatgatgcgaatctcccgttccaccacatcctaaaggtgctctattggattgagctgtggtgactgtggaggccatttgagtacagtgaactcattgtcatgttcaagaaaccagagaTGATTCGcaatttatgacatggtgtgttatcctgctggaagtagccatcagaagatggatacactgtggtcataaagggatggacatggtcagcaacaatacttaggtaggctgtggcattgacacaatgctcagttggtactaatgggcccaaagtgtgccaagaaaatatcccccacaccattacaccaccaccagcagcctgaacccttgatacaaggcaggatggatccatgcttttatgttgttgtcgCCAATctctgactctaccatctgaagtttgcagcagaaatcaagactcatcagaccaggcaacgtatttccaatcttctattatccAGTCTTGTTAAGCCtgtatgaattgtagcctcagtttcctgttcatagctgacaggagcggcacccggtgtggtcttctgctgctgtagcccatcagcctcaaggttggatgtattgtgtgtttagagatgctcttctgcagacctcggttgtaacgagagataatttgagttactgttgcctttctatcagctggaaccagtctggccattctcctctgacctctggcatcaacaaggcatttgggcccacagaactgccgctcactggatactttctctttttcggaccattctctgtaaaccctagagatggttgtgcgtgaaaatcccagtagatcagcagtttctgaaatactcagaccagcccgtctggcaccaacaaccatgccacattcaaagtcacttaagtccCCTTTCTTTCCCATGCTGATGCTAGGTTTGAACTGccgcagatcgtcttgaccatttctacatgccttaatgcattgggttgctgccatgtgattgcctGATTATTacaagcagctggacaggtgtacctaataaagtggccggtgagtttatgcACAATAATTTGGCCTAAGTTCTCTTTTGGTGTCCTTGGCTTTTCTCTGCTTGATGGAATTTTTCAGTAATGTAGTTTTCTTCATGAATAACCACCACggttttaaaagattaaaattgtAAGATTCCACCCACCGGTCCAATGACGGAGTCCAGTGTTGTGGTCGAAGGAATTCTGCGTGTATGCCTTTTCGGACGCTTCTGGAAAgggtttttattatttcattaaaatttatTGACCAATTTCATATCTGACTTCATGCGtgttttaatctgactccaattctATTTTATAAATCATCATTTATGTTTTAAGCTGATCATATTATTGGTTGTGATTTAATTTGGAATTTGATATTTTCTGGGGTCCGATATTCtaaattgtacgttcattagggacctacgtcgctcagagttccacgccccgggtttgcgtttcttctcacggacaatatgtcggcactctgaaaatagtcagaggatgcaggattaactaataTTTAGATAGGCTGGTTGCATTAATGCTCACCTAATTtcctaaataaacagaattttagCCAAGCCTGTGCAACTTGCTATTCC

Function

symbol description
podn Predicted to be active in extracellular space. Orthologous to human PODN (podocan).

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-100922-117 Predicted to be active in extracellular space. Orthologous to human PODN (podocan).

Ensembl:

ensembl_id ENSDARG00000019025

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043454 False 1593 mRNA 0.50 8 41889093 41914681
TCONS_00043455 True 4564 mRNA 0.42 5 41912151 41931897

Neighbor

gene id symbol gene type direction distance location
XLOC_021954 scp2b coding upstream 34989 41831224 ~ 41854104 (+)
XLOC_021953 pdyn coding upstream 86758 41799748 ~ 41802335 (+)
XLOC_021952 NA coding upstream 125929 41762569 ~ 41763164 (+)
XLOC_021951 CU914487.1 coding upstream 196630 41679586 ~ 41692463 (+)
XLOC_021950 NA coding upstream 579646 41307055 ~ 41309447 (+)
XLOC_021956 NA coding downstream 7204 41939101 ~ 41950026 (+)
XLOC_021957 NA coding downstream 70798 42002695 ~ 42075952 (+)
XLOC_021958 SHISAL2A coding downstream 199612 42131509 ~ 42148683 (+)
XLOC_021959 CABZ01049773.1 coding downstream 259342 42191239 ~ 42191353 (+)
XLOC_021960 NA coding downstream 259929 42191826 ~ 42192488 (+)
XLOC_021949 NA non-coding upstream 635870 41241241 ~ 41253223 (+)
XLOC_021947 CABZ01056826.1 non-coding upstream 689771 41187230 ~ 41199322 (+)
XLOC_021946 NA non-coding upstream 823495 41065152 ~ 41065598 (+)
XLOC_021964 cyp2aa6 non-coding downstream 384168 42316065 ~ 42330488 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G236249 LOC103376870 non-coding NC_053135.1 CM020932.1 20271475 ~ 20272734 (-)
striped catfish (Pangasianodon hypophthalmus) LOC113538277 NA misc NC_047596.1 CM018542.1 27834813 ~ 27841597 (-)
bowfin (Amia calva) G56546 LOC103376870 unknown CM030126.1 CM030126.1 35538887 ~ 35539810 (-)
mexican tetra (Astyanax mexicanus) LOC111196695 LOC108271652 non-coding NW_019170901.1 APWO02000499.1 195395 ~ 198841 (+)
mexican tetra (Astyanax mexicanus) G52422 NA non-coding NC_035902.1 CM008305.1 15979436 ~ 15979738 (+)