XLOC_022469 (tcf21)


Basic Information

Item Value
gene id XLOC_022469
gene name tcf21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31554269 ~ 31555696 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044318
ACAAGTTATGCTCATCCTCAGCTCGCGCATGACACGTTTCCACATAGCCAGTTGCTTCATCTCCACGTCCAGTCAGAGAACCTCAAACTCCCATCTCCTCAAGAAGTCCTTTTCTCCACTCCACCCTTGTCTCCAGCCAACATGTCCACCGGGTCCATCAGCGATGTGGATGAATTTCACGAATCTGAGCTGCTGGATGGTCTTCTGAAATTCGGTTCCGGTAAAGACCCGGGGACATCAAACGAGAGCACGGAGGACAGCTCGAACTGCGAAGGCGCGTCGGTGTCAGAATGTACAGGAAAGAGGCGCAAATCAGCCAATATGCGCAGATCAGCGCCCAATGGTGTGGCCCAAGAGGGCAAGCAGGTCCAGAGGAACGCAGCTAACGCGCGCGAGAGGGCGAGGATGCGCGTGCTCAGCAAAGCCTTCTCCCGGCTGAAGACGACGTTACCGTGGGTCCCGCCGGACACCAAACTCTCCAAGCTGGACACTCTGCGGCTGGCCTCCAGCTACATCGCGCACCTGCGACAGATACTCGCCAATGACAAATATGGGAATGGCTACATACATCCCGTCAACCTGACGTGGCCGTTTATGGTGGCTGGCAAACCAGAAAATGAACTCAAAGAAATGCTGAATTCTACACGTTTATGCGGGACTACAGCTTCCTGAGACTCAAGATGGACTTAAAACATGGacctattttaaatagtttatttctaAAAAGAGTGACATTTCATCTCTTACCCAAACACACGAGTGGGAATAACTGGGGACAACATCCTCACTCGCATTCCTGTAAAGAGAAAGTGATATCTATTTAAATGTTCACACGTGGGCCTTGCTGGTTCAAGGCAACAgtgtgtgatgttttttttttttttttttttttttcaattcaactaCTTTTATGAAGATTGTcatcactttttttaattaaaaatcacgAGACGTCATTATACTGGGCTTTTTGGTGACGCCGAGTGTCATGTCACGCGCCTTTGTTGTTGGCATTagaataattgtaaataaaacaaatattgaagTTATAGTTTcaaatgaa

Function

symbol description
tcf21 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and protein dimerization activity. Acts upstream of or within artery development and branchiomeric skeletal muscle development. Located in nucleus. Is expressed in several structures, including mesenchymal cell; mesoderm; pericardial region; pharyngeal arch; and proepicardial cluster. Orthologous to human TCF21 (transcription factor 21).

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0007530 sex determination biological_process
GO:0048536 spleen development biological_process
GO:0060425 lung morphogenesis biological_process
GO:0072162 metanephric mesenchymal cell differentiation biological_process
GO:0060426 lung vasculature development biological_process
GO:0048557 embryonic digestive tract morphogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060435 bronchiole development biological_process
GO:0048608 reproductive structure development biological_process
GO:0060766 negative regulation of androgen receptor signaling pathway biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0060008 Sertoli cell differentiation biological_process
GO:0032502 developmental process biological_process
GO:0072277 metanephric glomerular capillary formation biological_process
GO:0060021 roof of mouth development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0060840 artery development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0070888 E-box binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-88 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and protein dimerization activity. Acts upstream of or within artery development and branchiomeric skeletal muscle development. Located in nucleus. Is expressed in several structures, including mesenchymal cell; mesoderm; pericardial region; pharyngeal arch; and proepicardial cluster. Orthologous to human TCF21 (transcription factor 21).

Ensembl:

ensembl_id ENSDARG00000036869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044318 True 1063 mRNA 0.47 2 31554269 31555696

Neighbor

gene id symbol gene type direction distance location
XLOC_022468 eya4 coding downstream 41772 31439713 ~ 31512497 (-)
XLOC_022467 zgc:153284 coding downstream 117745 31426493 ~ 31436524 (-)
XLOC_022466 NA coding downstream 130747 31420811 ~ 31423522 (-)
XLOC_022465 CR759830.3 coding downstream 150561 31401819 ~ 31403708 (-)
XLOC_022464 lca5 coding downstream 153477 31380607 ~ 31400792 (-)
XLOC_022470 slc2a12 coding upstream 52563 31608259 ~ 31633310 (-)
XLOC_022471 sgk1 coding upstream 84543 31640239 ~ 31693309 (-)
XLOC_022472 BX927365.1 coding upstream 137672 31693368 ~ 31717710 (-)
XLOC_022473 aldh8a1 coding upstream 196908 31752604 ~ 31763753 (-)
XLOC_022474 BX927365.2 coding upstream 199056 31754752 ~ 31754868 (-)
XLOC_022461 NA non-coding downstream 287648 31253300 ~ 31266621 (-)
XLOC_022458 NA non-coding downstream 633258 30906424 ~ 30921011 (-)
XLOC_022453 CR456642.2 non-coding downstream 855582 30517199 ~ 30698687 (-)
XLOC_022480 NA non-coding upstream 451209 32006905 ~ 32007796 (-)
XLOC_022482 NA non-coding upstream 555622 32111318 ~ 32141320 (-)
XLOC_022484 CU469363.1 non-coding upstream 584147 32139843 ~ 32139958 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_12993865_12994921 TCF21 coding CI01000001 null 12993520 ~ 12995651 (-)