XLOC_022660 (CU682777.1)


Basic Information

Item Value
gene id XLOC_022660
gene name CU682777.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 44824083 ~ 44838839 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044606
GTGGGtcttcaggctgctggtggtccTGATTGTctctcagagtgtgtgtgtgatgttcttCTACACActggacacacactcacacggAGATGCTCTGACGGATTCGCTCCAGCTGCTGCGCTGTGCAAGACTCAGACGCCGGTTCTCCGTCCTCACCCCCGCCAAGAGCCTCAACATGAAGAAGTTCTCGCAGGAGCTCAGCGATTTCCTAAACTGCCCCTATAAACAGAACACCAGCGAGCAGCAGTTCAACAGaatGAGGCTGCAGTACTGCTGTAACGCCACACACTCATTAATCCTCACCAAACGCAACACAGCCGTCGATCATATCATCACTTATGAAACTGAAGGGAAACGCACATACAGAGTCAAAGCAGACCTTCACAAGATGCtgccagaggacTCCCCCTGGTCTGCTGGTGCTCTGGGTCTCTGTGCTGTTGTCGGCAGCAGTGGCATCTTGAAGAACAGCAGCTGTGGACGCCAGATCGACAGCGCAGACTTCGTCATCCGGTTTAATTTAGCGTTGGTTAATGACAGCGATGTTGGACTGAAGACAGATCTGATGAACATCAACCCCTCTCAGATTCAAAACCATGGAGCAGGATCCGGGTCCGCTAGTGGAGCGTATCAGTGTGTACGGAAACTCCTCCCTCATTATTCCTGCATTTGCATATGGGTTCTGCACCTCGCCATCCCTCCGGGTCCTCCGAGTCCTGCAGCCAATCAGACCTCAGCAGCCGGTGGTGTTTTTCAACCCACATTACCTGCGTGCTCTGGACCGCTTCTGGAAGTGGCGTGGCCTGAAGGAGCCCCGCCTCTCCTCgggatttattttaattagcgcTGCACTGGAAATGTGTGAGCACGTGCACGTGTACGGATTTTGGCCCTTCGGCACCGACCTGCAGGAAAACCCCGTTCCTTACCATTATTATGACCAAAGTAAGCCAAGCCCATATATGCACCGCATGCCAGAGGAGTTTGTGCGTCTCCTGCAGCTCCACAGCCAGGGGGCGCTGACACTGCATCTGCAGCCCTGCCACACACCATAG
>TCONS_00045172
atggcgCTGGTGCAGTGGGtcttcaggctgctggtggtccTGATTGTctctcagagtgtgtgtgtgatgttcttCTACACActggacacacactcacacggatgcagaatGAGGCTGCAGTACTGCTGTAACGCCACACACTCATTAATCCTCACCAAACGCAACACAGCCGTCGATCATATCATCACTTATGAAACTGAAGGGAAACGCACATACAGAGTCAAAGCAGACCTTCACAAGATGCtgccagaggacTCCCCCTGGTCTGCTGGTGCTCTGGGTCTCTGTGCTGTTGTCGGCAGCAGTGGCATCTTGAAGAACAGCAGCTGTGGACGCCAGATCGACAGCGCAGACTTCGTCATCCGGTTTAATTTAGCGTTGGTTAATGACAGCGATGTTGGACTGAAGACAGATCTGATGAACATCAACCCCTCTCAGATTCTCACAcaATACAAAACCATGGAGCAGGATCCGGGTCCGCTAGTGGAGCGTATCAGTGTGTACGGAAACTCCTCCCTCATTATTCCTGCATTTGCATATGGGTTCTGCACCTCGCCATCCCTCCGGGTCCTCCGAGTCCTGCAGCCAATCAGACCTCAGCAGCCGGTGGTGTTTTTCAACCCACATTACCTGCGTGCTCTGGACCGCTTCTGGAAGTGGCGTGGCCTGAAGGAGCCCCGCCTCTCCTCgggatttattttaattagcgcTGCACTGGAAATGTGTGAGCACGTGCACGTGTACGGATTTTGGCCCTTCGGCACCGACCTGCAGGAAAACCCCGTTCCTTACCATTATTATGACCAAAGTAAGCCAAGCCCATATATGCACCGCATGCCAGAGGAGTTTGTGCGTCTCCTGCAGCTCCACAGCCAGGGGGCGCTGACACTGCATCTGCAGCCCTGCCACACACCATAG
>TCONS_00044607
aatGAGGCTGCAGTACTGCTGTAACGCCACACACTCATTAATCCTCACCAAACGCAACACAGCCGTCGATCATATCATCACTTATGAAACTGAAGGGAAACGCACATACAGAGTCAAAGCAGACCTTCACAAGATGCtgccagaggacTCCCCCTGGTCTGCTGGTGCTCTGGGTCTCTGTGCTGTTGTCGGCAGCAGTGGCATCTTGAAGAACAGCAGCTGTGGACGCCAGATCGACAGCGCAGACTTCGTCATCCGGTTTAATTTAGCGTTGGTTAATGACAGCGATGTTGGACTGAAGACAGATCTGATGAACATCAACCCCTCTCAGATTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000054207

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044606 False 1055 transcribed_unprocessed_pseudogene 0.54 7 44824083 44838825
TCONS_00045172 False 918 lncRNA 0.53 6 44824083 44838839
TCONS_00044607 True 335 processed_transcript 0.50 3 44826557 44829277

Neighbor

gene id symbol gene type direction distance location
XLOC_022659 st8sia7.1 coding downstream 4983 44797665 ~ 44819100 (-)
XLOC_022658 NA coding downstream 29635 44787967 ~ 44794448 (-)
XLOC_022657 si:ch73-269m23.5 coding downstream 37239 44772661 ~ 44786844 (-)
XLOC_022656 mogat3a coding downstream 100981 44712588 ~ 44723102 (-)
XLOC_022655 kif1c coding downstream 146768 44667616 ~ 44677315 (-)
XLOC_022661 plod3 coding upstream 5021 44843860 ~ 44879214 (-)
XLOC_022662 fhdc5 coding upstream 62559 44901398 ~ 44903048 (-)
XLOC_022663 fhdc5 coding upstream 64465 44903304 ~ 44916800 (-)
XLOC_022664 tfr2 coding upstream 101861 44940700 ~ 44965582 (-)
XLOC_022665 ctc1 coding upstream 131375 44970214 ~ 45022681 (-)
XLOC_022652 NA non-coding downstream 258314 44553065 ~ 44565769 (-)
XLOC_022650 NA non-coding downstream 302109 44515199 ~ 44521974 (-)
XLOC_022646 CABZ01071874.1 non-coding downstream 807001 44013682 ~ 44017082 (-)
XLOC_022645 CABZ01071875.1 non-coding downstream 813542 44010425 ~ 44010541 (-)
XLOC_022666 NA non-coding upstream 193627 45032466 ~ 45035485 (-)
XLOC_022669 NA non-coding upstream 289260 45128099 ~ 45136632 (-)
XLOC_022670 NA non-coding upstream 316204 45155043 ~ 45339439 (-)
XLOC_022681 NA non-coding upstream 995417 45834256 ~ 45841579 (-)
XLOC_022687 NA non-coding upstream 1204733 46043572 ~ 46047869 (-)

Expression


Co-expression Network