XLOC_022771 (cavin1b)


Basic Information

Item Value
gene id XLOC_022771
gene name cavin1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 7631797 ~ 7668158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045284
ACTGTGGATTCTTCGACGCGAGCACAATAtaatattgaagtcagaattactacaAATATTAATGAATTTAACAGCACAAATGGTAGACATAGATAGCCCATAGACTAGCATCACCATCTCATTCTAGCGGTAACATATAAAACAAATTCCCGCTCGTATAAAACGtcatactttaaatatatatgtgttgtatttgttataagtgtgaagaaaaaaaaaacacgaaaaaTAAAGATAAACGCTCTTACCGTCCTCGACGTCTTCACTAGATCAGTTCACGTCTGCGCTGATGATGGTGAGAACTGCTGTATGACGTCACTCTCGCAGCTGCTGCTACAGCGTCACGTGATTGTTTCTCTTTTCAAGATGACTGACCTTTCCACGGATATGATGCAGCTCTGTGTGTTGTGCAACGGTGAAAGGTGAGAGGGCAGACCTCTGAAGAATGTAGCACAGACTCTGTAATGAACCAGTGCATATTTAGAGCCGGGAACTACTGAAGAGCCAGAGGGTCTCATTGGAAGCCACAGGGTGGAGCACTGCTCTCCAGCGCAGCCCGAGCCTCACAGCGTGCGTGCAGGGGGAGTGTCAGCGGGCAAGAGGAAGGCAGCTGGCACGCAGCTGATTTGTCTGAAGGCTTTCACAGGAAAGTGTGGCATTGACGACCCAGCTCTCATGCAGTACAGACCGTCCACAGCCTGCTTGCCAGCCTCCGCTGCTCTGGCCAGatcccaaacacacacagagtgagAAACAGAGAGAAGGAGGGAGAGCAGATGTGGTGAGTGTGACAGAGGAGGGAACAGTTAGGTGAACTCTACAGAGGGGAATCCTGAGAGCAGAAAGAAAGGCGAGTGAGGACACAGAACTTCCCACAGCTTGCATCCTTCTCACATTCCACTTTTATTTTGCAAGCACGTTCAAGTTTCAAACATGGAGGTGATTGAAGACAGCCGTCTGCATCTGGAGGTGCCCGAGCTGCGCAAGTCTCTTACTGAGATCTCAGAAGATGAAATCAACCTCCCGGTCTCTGATGATGAAGACGAAGCCACCGCCGAGAACAAAGCTAAAGATGCTGCCGAGAAAGAAGAGGCTGGGGAGGGTGGCGAGATGAATGGGGTCATGGTCCTCACGCTGCTTGACAAAATCATTGGAGCCGTTGACCAGATCCAGCAGACGCAGGCTGGGTTGGAAGCCCGTCAGCGGGACATGGAGAGATCTGTGACGGGAATCCAGGGGGAGCTCACCAAACTGTCCAAGAGCCACACCACCACAGCCAACACCGTCAATAAGATGCTGGAGAAGGTGCGTAAGGTGAGCGTGAACGTCAAGTCGGTGCGGGGGAACCTGGAGAAACAGGCTGGCCAGATCAAACGTCTGGAGAGCAACGAGAACGAGCTCCTAAAGAGAAGAAACTTTAAAGTCATGATCTATCAGGATGAAGTAAAAGTGGGTTCGAAAGTGAATGTGGCCAAGTCTATGAAGTATCCAGAGCCTGTGGAAGGGGAAGCTGAGGGTGAACTCAAAGCTGCAGCAGAAGAAGGAGGAGAGGACAAAGAGAAAGTTAATCTGGACCTGTCCTCTGATGAAGAGGAGGTGGAGATTGAGGAGACAATTGAGGAGTCTCGAGCAGAACGCATCAAGCGGAGCAGCCTGCAACGTGTCCAGAACATCAAAACCGTTTTCTCCAAGGGGAATATGGAGAAAACCAAACAGAAGACCAAGGAGAACTTGGAGAAGACCAAACAGAAGACCAAAGAGAACCTGGAGAAAACTCGCATGAGGACCAAAGAGAACTTGGAAAAAACAAGACAGAAGACTAAGGAAAACCTTGAAAAGACCAAACAGAAGACCCGAGAGAACCTGGAGAAAACACGTCACAACATAGAAAAGAAAATGGGTAAACTTGGCACCCGCATGTCCGTGAACCCCGAGCGCAAAGAGAAGATGAAGACTTCACAGAAGAAGGTGATGAAGTCTTTTACTCCTGACCACACCATCTACGCCCGCTCCAAAACGGCCGTCTACAAGGTTCCACCGTTCACCTTCCATGTGAAGAAGATCCGTGAGGGAGAAGTGGAGATTCAGGGAACTGAGATGGTGGAAGTTGTCGGCGACACAGAGGAGGTGGAGAACGCAGTGATGGAGGGAGAGGAAGATGCAGAGATGGAGATGGAAGCTGGAGAGATGGTGGAGGAAGACGAGGACGAGACAGAAGACAGCCCTGAGATGAGAGCGCTGCTGGAGAAAGGAGACGAGCTGGTGCTGGTGGAAGATCATGACAGAGACAGCGATTAG
>TCONS_00045285
ATTGACGACCCAGCTCTCATGCAGTACAGACCGTCCACAGCCTGCTTGCCAGCCTCCGCTGCTCTGGCCAGatcccaaacacacacagagtgagAAACAGAGAGAAGGAGGGAGAGCAGATGTGGTGAGTGTGACAGAGGAGGGAACAGTTAGGTGAACTCTACAGAGGGGAATCCTGAGAGCAGAAAGAAAGGCGAGTGAGGACACAGAACTTCCCACAGCTTGCATCCTTCTCACATTCCACTTTTATTTTGCAAGCACGTTCAAGTTTCAAACATGGAGGTGATTGAAGACAGCCGTCTGCATCTGGAGGTGCCCGAGCTGCGCAAGTCTCTTACTGAGATCTCAGAAGATGAAATCAACCTCCCGGTCTCTGATGATGAAGACGAAGCCACCGCCGAGAACAAAGCTAAAGATGCTGCCGAGAAAGAAGAGGCTGGGGAGGGTGGCGAGATGAATGGGGTCATGGTCCTCACGCTGCTTGACAAAATCATTGGAGCCGTTGACCAGATCCAGCAGACGCAGGCTGGGTTGGAAGCCCGTCAGCGGGACATGGAGAGATCTGTGACGGGAATCCAGGGGGAGCTCACCAAACTGTCCAAGAGCCACACCACCACAGCCAACACCGTCAATAAGATGCTGGAGAAGGTGCGTAAGGTGAGCGTGAACGTCAAGTCGGTGCGGGGGAACCTGGAGAAACAGGCTGGCCAGATCAAACGTCTGGAGAGCAACGAGAACGAGCTCCTAAAGAGAAGAAACTTTAAAGTCATGATCTATCAGGTGAGACTTgcacagtttaaacacagttaaagtataaaaatgtactTGATATTACATTATCATTTCAAAAAAGAAAGACACGAAAGAGACATACAGTACAATATAAAATGAATGCAGACAGACAGCTGATAGCTCAAGTGTTTGGAGGAAATTGATAAAGCATGCTCTTATTAAAACATTAGAACGATGTTACTTTTAACTGCAGATTTCGGTTTTCTAGCAGATCATTGCACATTTAAAGACATTGTTGAGATCTCTCTTTAGATTTTAGATTAAACAGGAGAAACCAGGAGAAAACAATGATATATGCCTTTGTGCTCAATTTAAAGTTATGAGTGTTTTGAAAAGAAGATCTTTCTTACTGAGTATAATGGAAAATGCAGGGGGCATCGTGTCATAGACGTAATTGGTTGGGTGTGGTCTTGGGTAAATGTCTTACCGCTAACAAATATAGCTATATACTGTTGCCCAAAAAGCATTTGCATACTTAAAATGCACGACTTTCTAaacattatatgtaaaaaaaa
>TCONS_00045286
CACGTTCAAGTTTCAAACATGGAGGTGATTGAAGACAGCCGTCTGCATCTGGAGGTGCCCGAGCTGCGCAAGTCTCTTACTGAGATCTCAGAAGATGAAATCAACCTCCCGGTCTCTGATGATGAAGACGAAGCCACCGCCGAGAACAAAGCTAAAGATGCTGCCGAGAAAGAAGAGGCTGGGGAGGGTGGCGAGATGAATGGGGTCATGGTCCTCACGCTGCTTGACAAAATCATTGGAGCCGTTGACCAGATCCAGCAGACGCAGGCTGGGTTGGAAGCCCGTCAGCGGGACATGGAGAGATCTGTGACGGGAATCCAGGGGGAGCTCACCAAACTGTCCAAGAGCCACACCACCACAGCCAACACCGTCAATAAGATGCTGGAGAAGGTGCGTAAGGTGAGCGTGAACGTCAAGTCGGTGCGGGGGAACCTGGAGAAACAGGCTGGCCAGATCAAACGTCTGGAGAGCAACGAGAACGAGCTCCTAAAGAGAAGAAACTTTAAAGTCATGATCTATCAGGATGAAGTAAAAGTGGGTTCGAAAGTGAATGTGGCCAAGTCTATGAAGTATCCAGAGCCTGTGGAAGGGGAAGCTGAGGGTGAACTCAAAGCTGCAGCAGAAGAAGGAGGAGAGGACAAAGAGAAAGTTAATCTGGACCTGTCCTCTGATGAAGAGGAGGTGGAGATTGAGGAGACAATTGAGGAGTCTCGAGCAGAACGCATCAAGCGGAGCAGCCTGCAACGTGTCCAGAACATCAAAACCGTTTTCTCCAAGGGGAATATGGAGAAAACCAAACAGAAGACCAAGGAGAACTTGGAGAAGACCAAACAGAAGACCAAAGAGAACCTGGAGAAAACTCGCATGAGGACCAAAGAGAACTTGGAAAAAACAAGACAGAAGACTAAGGAAAACCTTGAAAAGACCAAACAGAAGACCCGAGAGAACCTGGAGAAAACACGTCACAACATAGAAAAGAAAATGGGTAAACTTGGCACCCGCATGTCCGTGAACCCCGAGCGCAAAGAGAAGATGAAGACTTCACAGAAGAAGGTGATGAAGTCTTTTACTCCTGACCACACCATCTACGCCCGCTCCAAAACGGCCGTCTACAAGGTTCCACCGTTCACCTTCCATGTGAAGAAGATCCGTGAGGGAGAAGTGGAGATTCAGGGAACTGAGATGGTGGAAGTTGTCGGCGACACAGAGGAGGTGGAGAACGCAGTGATGGAGGGAGAGGAAGATGCAGAGATGGAGATGGAAGCTGGAGAGATGGTGGAGGAAGACGAGGACGAGACAGAAGACAGCCCTGAGATGAGAGCGCTGCTGGAGAAAGGAGACGAGCTGGTGCTGGTGGAAGATCATGACAGAGACAGCGATTAGTGTTAgtgtgcatgtttgtatgtgtgtgttcaggggTACTTACACATTA

Function

symbol description
cavin1b Predicted to enable rRNA primary transcript binding activity. Acts upstream of or within notochord development. Predicted to be located in membrane. Predicted to be active in caveola and cytoplasm. Is expressed in blood vasculature; notochord; otic vesicle; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in congenital generalized lipodystrophy type 4. Orthologous to human CAVIN1 (caveolae associated protein 1).

GO:

id name namespace
GO:0006361 transcription initiation from RNA polymerase I promoter biological_process
GO:0006363 termination of RNA polymerase I transcription biological_process
GO:0030903 notochord development biological_process
GO:0005901 caveola cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042134 rRNA primary transcript binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5509 Predicted to enable rRNA primary transcript binding activity. Acts upstream of or within notochord development. Predicted to be located in membrane. Predicted to be active in caveola and cytoplasm. Is expressed in blood vasculature; notochord; otic vesicle; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in congenital generalized lipodystrophy type 4. Orthologous to human CAVIN1 (caveolae associated protein 1).

Ensembl:

ensembl_id ENSDARG00000059362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045284 False 2298 mRNA 0.49 4 7631797 7668109
TCONS_00045285 False 1307 mRNA 0.45 1 7637264 7638570
TCONS_00045286 True 1432 mRNA 0.50 2 7637522 7668158

Neighbor

gene id symbol gene type direction distance location
XLOC_022770 NA coding upstream 73907 7553299 ~ 7557890 (+)
XLOC_022769 kmt2ca coding upstream 82187 7336411 ~ 7549610 (+)
XLOC_022768 XRCC2 coding upstream 301641 7322116 ~ 7330156 (+)
XLOC_022767 si:dkeyp-101e12.1 coding upstream 473496 7153628 ~ 7158301 (+)
XLOC_022766 CR790361.1 coding upstream 1049629 6582052 ~ 6582168 (+)
XLOC_022772 btr33 coding downstream 40494 7708652 ~ 7714562 (+)
XLOC_022773 zgc:56095 coding downstream 73363 7741521 ~ 7746478 (+)
XLOC_022774 ptprh coding downstream 114155 7782313 ~ 7816871 (+)
XLOC_022775 zgc:101569 coding downstream 159939 7828097 ~ 7854229 (+)
XLOC_022776 bmp6 coding downstream 193215 7861373 ~ 7935809 (+)
XLOC_022765 BX120013.1 non-coding upstream 1226481 6405194 ~ 6405316 (+)
XLOC_022764 NA non-coding upstream 1232012 6389435 ~ 6399785 (+)
XLOC_022761 NA non-coding upstream 1542544 6082660 ~ 6089253 (+)
XLOC_022777 NA non-coding downstream 574866 8243024 ~ 8245079 (+)
XLOC_022778 NA non-coding downstream 599425 8267583 ~ 8295447 (+)
XLOC_022780 NA non-coding downstream 1163896 8832054 ~ 8841380 (+)
XLOC_022785 NA non-coding downstream 1607086 9275244 ~ 9281017 (+)
XLOC_022798 NA non-coding downstream 2749146 10417304 ~ 10509462 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016913 ptrf,LOC103029568,LOC105905374,LOC105028466,LOC107742253,LOC107664665,LOC103381660 coding CM030122.1 CM030122.1 34268998 ~ 34271418 (+)