G372380


Basic Information

Item Value
gene id G372380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 16401132 ~ 16475585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU423253
atcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgatagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccaaatttgtgcaatatacgactgactgattgttgtcctatggacagagtctcccccctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggcagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttaggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcagATAAAGAACTGGGACCCGTTGGTGTTAGGGCCAGCGTTGGCCATGGACAGACAGCCCATGCCTGTGTGCTTCAGGGTGAAGTTCTCGTCAGCAAACTTATTGCCGTAGATGGACTTGCCCCCAGTTCCATTGTGGTTGGTGAAGTCTCCGCCCTGAAGGTAAGGAAATATATTAATATTGTCACATGTCATGACACGCTCACTTACAAGCCCTTCCCCAACAA

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU423253 True 879 lncRNA 0.46 2 16401132 16475585

Neighbor

gene id symbol gene type direction distance location
ptges ptges coding upstream 542772 15852569 ~ 15858360 (+)
usp20 LOC106569850 coding upstream 561673 15816800 ~ 15839459 (+)
LOC118964570 NA coding upstream 569391 15829533 ~ 15831741 (+)
med22 med22 coding upstream 590630 15796177 ~ 15810502 (+)
LOC110523312 surf1 coding upstream 610104 15788795 ~ 15791028 (+)
pargl LOC106569224 coding downstream 41215 16516800 ~ 16557705 (+)
LOC110523336 NA coding downstream 215320 16690905 ~ 16694551 (+)
polm LOC106569276 coding downstream 236597 16712182 ~ 16726009 (+)
ved LOC106569620 coding downstream 257051 16732636 ~ 16735129 (+)
purbb LOC106562912 coding downstream 265768 16741353 ~ 16744067 (+)
G372345 NA non-coding upstream 45820 16355092 ~ 16355312 (+)
G372342 NA non-coding upstream 47892 16353024 ~ 16353240 (+)
G372333 NA non-coding upstream 65579 16335185 ~ 16335553 (+)
G372331 NA non-coding upstream 69785 16331091 ~ 16331347 (+)
G372329 NA non-coding upstream 71474 16329408 ~ 16329658 (+)
G372374 NA non-coding downstream 941 16476526 ~ 16479402 (+)
G372381 NA non-coding downstream 83071 16558656 ~ 16559057 (+)
G372480 NA non-coding downstream 97259 16572844 ~ 16573465 (+)
G372505 NA non-coding downstream 131747 16607332 ~ 16607737 (+)
G372506 NA non-coding downstream 133917 16609502 ~ 16609777 (+)
G372281 LOC106569177 other upstream 180199 16218328 ~ 16220933 (+)
G371615 LOC100194725 other upstream 606010 15791559 ~ 15795122 (+)
G371182 NA other upstream 1272315 15124290 ~ 15128817 (+)
LOC110519479 LOC106596183 other upstream 1347576 15047739 ~ 15054353 (+)
LOC118964542 LOC106569496 other upstream 1595661 14798616 ~ 14805526 (+)
G372373 NA other downstream 260057 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 394849 16870434 ~ 16882185 (+)
G373726 NA other downstream 1228528 17704113 ~ 17707757 (+)
arhgef28a LOC106568988 other downstream 1591858 18067350 ~ 18177035 (+)
G376320 NA other downstream 3507676 19983261 ~ 19983848 (+)

Expression


Co-expression Network