Fish Transcriptome and Expression Database

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model fish

XLOC_023236 (BX897669.1)

Basic Information

Item	Value
gene id	XLOC_023236
gene name	BX897669.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007135.7
NCBI id	CM002908.2
chromosome length	42172926
location	2919405 ~ 2919521 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045986
TTGAACAGCCATATCCCTCTGCAGCCCAAGagtggttactcactgaagctaagcagggctgagcctggtcagtatctggacgtgagaccacatgggaaaactagattgctgtgggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000106273

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00045986	True	117	rRNA	0.51	1	2919405	2919521

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_023235	dipk1c	coding	downstream	1865	2889335 ~ 2917540 (-)
XLOC_023234	cyb5a	coding	downstream	76298	2836307 ~ 2843107 (-)
XLOC_023233	NA	coding	downstream	90197	2826210 ~ 2829208 (-)
XLOC_023232	NA	coding	downstream	97621	2762720 ~ 2821784 (-)
XLOC_023230	fars2	coding	downstream	182596	2557794 ~ 2736809 (-)
XLOC_023237	tubb6	coding	upstream	21479	2941000 ~ 2947406 (-)
XLOC_023238	cidea	coding	upstream	30416	2949937 ~ 2959182 (-)
XLOC_023239	sugct	coding	upstream	337855	3257376 ~ 3342665 (-)
XLOC_023240	nck1b	coding	upstream	427989	3347510 ~ 3468210 (-)
XLOC_023241	slc35g2b	coding	upstream	494333	3413854 ~ 3419998 (-)
XLOC_023665	dre-mir-735	misc	upstream	35258440	38177961 ~ 38178027 (-)
XLOC_023231	CU104764.1	non-coding	downstream	230211	2689078 ~ 2689194 (-)
XLOC_023225	CABZ01067348.1	non-coding	downstream	1081583	1673250 ~ 1837822 (-)
XLOC_023223	NA	non-coding	downstream	1299442	1462219 ~ 1619963 (-)
XLOC_023243	NA	non-coding	upstream	561872	3481393 ~ 3487660 (-)
XLOC_023244	AL954666.1	non-coding	upstream	589856	3509377 ~ 3534690 (-)
XLOC_023246	NA	non-coding	upstream	882265	3801786 ~ 3814597 (-)
XLOC_023247	CR388417.2	non-coding	upstream	897177	3816698 ~ 3842866 (-)
XLOC_023248	NA	non-coding	upstream	925571	3845092 ~ 4134381 (-)

Expression

Co-expression Network