XLOC_023242 (idi1)


Basic Information

Item Value
gene id XLOC_023242
gene name idi1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 3469373 ~ 3477103 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045997
TTTCTTCATCATAAATTAGTGTATTTTCTGGAGCGTCACACACATCTCAAACATCACAGCTAAGCAGTGTAAAAGATAGTTTATTGCTCGCTGGTgtttaggtgtgtgtgtttgcgcgtgtCTGTGGTGTGATGGCGTGTTAGTTGTGCTGCAGTGTGATTGGTCAGTTGTCTGTGCCCTCATGGTGCGGTTGTTAAGGGCGGTGCGCAGATCCGCTGCTGCGCTGCTCTGGAGAGCCGATAAACCCAATAATAATACCGCTGGAGAAGCTCAGACTGCGGCTTTTTCTGCTCCACAACACAGtCAGGTCAGACGGTTTACTTCACCTGTAAGGATGCCGGAGGTTAACATGGATAATCTGGATGAAAAGCAAGTGCAGTTGCTTGCTGAAATGTGCATCCTGATAGATGAGAATGACAAAAAGATTGGAGCAGACAGCAAGAAAAACTGCCATCTCAACTCAAACATCGATAAAGGTTTATTGCATCGAGCGTTCAGTGTTTTCCTGTTTAACAGTGAGGAAAAGCTGCTCCTTCAGCAAAGATCTGATGCCAAAATCACTTTTCCAGGCTGTTTTACCAACACTTGCTGTAGTCACCCTTTACACACTACCAGTGAACTGGAGGAGCAGGACGCCATCGGCGTCCGACGTGCCGCTCAGAGACGCCTGCAAGCCGAGCTTGGCATTCCCATGGACCAGGTTCTTCCAGAGGAGATGACCTACCTGACCCGCATCCATTATAAAGCCCAGTCAGATGGCGTTTGGGGCGAACACGAGATCGACTACATCATCTTCATGCAGAAAGACGTAGATCTGAATCCAGACCCCAACGAGATCCAGAGCCACTGCTACGTGTCCAAAGAAGAGCTGAAGGAGATCCTGGAGAAAGCCAAGAGGAAAGAGCTGCTGATCACGCCCTGGTTCAGCCTCATCGCTGAAACCTTCCTCTTCAAATGGTGGGAAAACCTCAGAAACCTCAAACCATTCATCGAGCACGACAGAATCCACCGCATGTAGGACACTAATGGACACTGCTGACTTACTAATGGACACTTAAAGGGGTAGTACACCCAAAATAAATATGTACTcagtatttactctccctcaagttgtTCAAGACCTTTATCAGTttctttattcagttaaacactaCATTAGTATGttggaaacctttaaccattgacttccattgtaaggaaaataaacaattctatggaagtcaatggttacaggttttcagctttcttcaaaatatcctcttttgtgtttgacagcgGAAAGAAAcgcaaacaggtttggaacaagtgaagggtgagtgaatgatgactgAACTTAACATTTTTGGGTTCTTGTGTCCTGtggaacactaaagaagatattttgaagaaagctgaaaaccggtaaccattgacttacatagtactagaaacaaatactatagaagtccgtggttcttcaaaatatcatcttgtgtgtttgacagaagaGAAAAAACTCTtataggtttgaaacaagtaaagggtgagtaaatgattgagtgaatgatgacagaaaatatttgggtgaactatccctttaataggcCACTCCATCATAAGGAAAAGACTGATTGTTTTGATCCTGAGGAGTCTTTCTGAGACAATCTGAGAGGTTTACttagtgttattttttttcttcttatatgTTGATTCGAACTTAATTACAACTCGTATTACAAGTTGATGGaagaaaatgtaactatttaaagagacagttcacctaaaactgaaaattctgtcatttactcacactttaattatttcttttttctgtcaaacacaaaagaagatgttttgaagaacgctgacaaccagtaaccattgacttcaatagtaggaaaaacaaaaattattgaaTCAGTCTGTAACCATTAATGATTAcgtcattggttacaggttttcagctttcttcaaattgtcttttgtttttgacagaagaaagaaactcataaaggtttggaacaagtaaagggtgagtaaatgatgacagaatcgttcaattttgggtgaactattcctttaataggCCACTCCATTACAAGGAAAAAAAGACTTTGTTTTGATTCTGAGGAGTCTTGGGACAATCTCAGAGTCTATTTAGTGTTAAAGATCTTGTTAGGTGTTGATTAGAACTTTATTACAACTCACCCATTATTTTTTGCAATActtttttagtttcttttatctgtcaaacacataagaagatattttgaagaatgctgaaagcctgtaaccattgactttcattgtaggaaAAAGAAACATTCTATGGAAGTtttagcttttttcaaaatatcttcttcagtgtttGACAGAGGAAataatctcaaacaggtttggagcaaatAAAGGGTGAgtgatgatgacagaattaaaacaAATTTGGGTTCCTtctgttctgttgaacactaaagaagataatttgaagaaagttgaaaaccggtaaccattgactgtCATAGAATGTTTTCTTTCCTACTATCGAAGTCAATAATTACAAGCTTtcagcattctacaaaatatcttctgttgtgtttgacagaagaaagaaactcataaaggtttaaaacaagtaaagggtgagtaaacgattgagtgaatgatgacagaatgcaattatttttggtgaactattcctttaataggCCGCTCTattacaagaaaaaagaaaagactgAATGTTTTGATCCTAAGGAGTCTTTGATCAATCTGAGAGTCTATTTAGTGTTTATTACAACTCGTATTACACGTGTATTACAAAGTGATGgaaaaaaatgtaagtatttaCAGAGGCAGTTCACCCAGAACtgaaatttctgcaatttactcaccctttatttgtcaattcatttttttgagtttcttttattgaattttatgaagaatgctgaaaatctgaCTTCAATAGCAAtcgttttttcctactatggatgtcgatggttacaggttttcagctttcttcaaaatatattcagtttttttgacagaagaaagaaactcaaaacggTTTACCATCACTTGATGGtgagtacatttaatttttgggggtgtactatccctttaaggaggtTTTACTAACTAACATTTTGTCCATTGTGTGTGAAGTGCCTAGTTTCATATCAGAGACTATGCATATGGAAGAATGTTTCGTGTAGATAAAACTATCAGGGCTTATTATGAAGTTTACAGTTGTGTTGATTTTTAGAGAACTACAATAAAATGTGATTTCCTTATA

Function

symbol description
idi1 Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including IDI1 (isopentenyl-diphosphate delta isomerase 1).

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0009240 isopentenyl diphosphate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004452 isopentenyl-diphosphate delta-isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-44 Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including IDI1 (isopentenyl-diphosphate delta isomerase 1).

Ensembl:

ensembl_id ENSDARG00000019976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045997 True 3274 mRNA 0.38 5 3469373 3477103

Neighbor

gene id symbol gene type direction distance location
XLOC_023240 nck1b coding downstream 1163 3347510 ~ 3468210 (-)
XLOC_023241 slc35g2b coding downstream 49375 3413854 ~ 3419998 (-)
XLOC_023239 sugct coding downstream 126708 3257376 ~ 3342665 (-)
XLOC_023238 cidea coding downstream 510191 2949937 ~ 2959182 (-)
XLOC_023237 tubb6 coding downstream 521967 2941000 ~ 2947406 (-)
XLOC_023243 NA coding upstream 4290 3481393 ~ 3487660 (-)
XLOC_023244 AL954666.1 coding upstream 32274 3509377 ~ 3534690 (-)
XLOC_023245 adarb2 coding upstream 60659 3537762 ~ 3783497 (-)
XLOC_023246 NA coding upstream 324683 3801786 ~ 3814597 (-)
XLOC_023247 CR388417.2 coding upstream 339595 3816698 ~ 3842866 (-)
XLOC_023665 dre-mir-735 misc upstream 34700858 38177961 ~ 38178027 (-)
XLOC_023236 BX897669.1 non-coding downstream 549852 2919405 ~ 2919521 (-)
XLOC_023233 NA non-coding downstream 640165 2826210 ~ 2829208 (-)
XLOC_023232 NA non-coding downstream 647589 2762720 ~ 2821784 (-)
XLOC_023231 CU104764.1 non-coding downstream 780179 2689078 ~ 2689194 (-)
XLOC_023225 CABZ01067348.1 non-coding downstream 1631551 1673250 ~ 1837822 (-)
XLOC_023248 NA non-coding upstream 367989 3845092 ~ 4134381 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000070_02659015_02664679 IDI1 coding CI01000070 null 2658854 ~ 2665065 (+)