RNA id: TCONS_00045997


Basic Information

Item Value
RNA id TCONS_00045997
length 3274
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_023242
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 3469373 ~ 3477103 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTTCATCATAAATTAGTGTATTTTCTGGAGCGTCACACACATCTCAAACATCACAGCTAAGCAGTGTAAAAGATAGTTTATTGCTCGCTGGTgtttaggtgtgtgtgtttgcgcgtgtCTGTGGTGTGATGGCGTGTTAGTTGTGCTGCAGTGTGATTGGTCAGTTGTCTGTGCCCTCATGGTGCGGTTGTTAAGGGCGGTGCGCAGATCCGCTGCTGCGCTGCTCTGGAGAGCCGATAAACCCAATAATAATACCGCTGGAGAAGCTCAGACTGCGGCTTTTTCTGCTCCACAACACAGtCAGGTCAGACGGTTTACTTCACCTGTAAGGATGCCGGAGGTTAACATGGATAATCTGGATGAAAAGCAAGTGCAGTTGCTTGCTGAAATGTGCATCCTGATAGATGAGAATGACAAAAAGATTGGAGCAGACAGCAAGAAAAACTGCCATCTCAACTCAAACATCGATAAAGGTTTATTGCATCGAGCGTTCAGTGTTTTCCTGTTTAACAGTGAGGAAAAGCTGCTCCTTCAGCAAAGATCTGATGCCAAAATCACTTTTCCAGGCTGTTTTACCAACACTTGCTGTAGTCACCCTTTACACACTACCAGTGAACTGGAGGAGCAGGACGCCATCGGCGTCCGACGTGCCGCTCAGAGACGCCTGCAAGCCGAGCTTGGCATTCCCATGGACCAGGTTCTTCCAGAGGAGATGACCTACCTGACCCGCATCCATTATAAAGCCCAGTCAGATGGCGTTTGGGGCGAACACGAGATCGACTACATCATCTTCATGCAGAAAGACGTAGATCTGAATCCAGACCCCAACGAGATCCAGAGCCACTGCTACGTGTCCAAAGAAGAGCTGAAGGAGATCCTGGAGAAAGCCAAGAGGAAAGAGCTGCTGATCACGCCCTGGTTCAGCCTCATCGCTGAAACCTTCCTCTTCAAATGGTGGGAAAACCTCAGAAACCTCAAACCATTCATCGAGCACGACAGAATCCACCGCATGTAGGACACTAATGGACACTGCTGACTTACTAATGGACACTTAAAGGGGTAGTACACCCAAAATAAATATGTACTcagtatttactctccctcaagttgtTCAAGACCTTTATCAGTttctttattcagttaaacactaCATTAGTATGttggaaacctttaaccattgacttccattgtaaggaaaataaacaattctatggaagtcaatggttacaggttttcagctttcttcaaaatatcctcttttgtgtttgacagcgGAAAGAAAcgcaaacaggtttggaacaagtgaagggtgagtgaatgatgactgAACTTAACATTTTTGGGTTCTTGTGTCCTGtggaacactaaagaagatattttgaagaaagctgaaaaccggtaaccattgacttacatagtactagaaacaaatactatagaagtccgtggttcttcaaaatatcatcttgtgtgtttgacagaagaGAAAAAACTCTtataggtttgaaacaagtaaagggtgagtaaatgattgagtgaatgatgacagaaaatatttgggtgaactatccctttaataggcCACTCCATCATAAGGAAAAGACTGATTGTTTTGATCCTGAGGAGTCTTTCTGAGACAATCTGAGAGGTTTACttagtgttattttttttcttcttatatgTTGATTCGAACTTAATTACAACTCGTATTACAAGTTGATGGaagaaaatgtaactatttaaagagacagttcacctaaaactgaaaattctgtcatttactcacactttaattatttcttttttctgtcaaacacaaaagaagatgttttgaagaacgctgacaaccagtaaccattgacttcaatagtaggaaaaacaaaaattattgaaTCAGTCTGTAACCATTAATGATTAcgtcattggttacaggttttcagctttcttcaaattgtcttttgtttttgacagaagaaagaaactcataaaggtttggaacaagtaaagggtgagtaaatgatgacagaatcgttcaattttgggtgaactattcctttaataggCCACTCCATTACAAGGAAAAAAAGACTTTGTTTTGATTCTGAGGAGTCTTGGGACAATCTCAGAGTCTATTTAGTGTTAAAGATCTTGTTAGGTGTTGATTAGAACTTTATTACAACTCACCCATTATTTTTTGCAATActtttttagtttcttttatctgtcaaacacataagaagatattttgaagaatgctgaaagcctgtaaccattgactttcattgtaggaaAAAGAAACATTCTATGGAAGTtttagcttttttcaaaatatcttcttcagtgtttGACAGAGGAAataatctcaaacaggtttggagcaaatAAAGGGTGAgtgatgatgacagaattaaaacaAATTTGGGTTCCTtctgttctgttgaacactaaagaagataatttgaagaaagttgaaaaccggtaaccattgactgtCATAGAATGTTTTCTTTCCTACTATCGAAGTCAATAATTACAAGCTTtcagcattctacaaaatatcttctgttgtgtttgacagaagaaagaaactcataaaggtttaaaacaagtaaagggtgagtaaacgattgagtgaatgatgacagaatgcaattatttttggtgaactattcctttaataggCCGCTCTattacaagaaaaaagaaaagactgAATGTTTTGATCCTAAGGAGTCTTTGATCAATCTGAGAGTCTATTTAGTGTTTATTACAACTCGTATTACACGTGTATTACAAAGTGATGgaaaaaaatgtaagtatttaCAGAGGCAGTTCACCCAGAACtgaaatttctgcaatttactcaccctttatttgtcaattcatttttttgagtttcttttattgaattttatgaagaatgctgaaaatctgaCTTCAATAGCAAtcgttttttcctactatggatgtcgatggttacaggttttcagctttcttcaaaatatattcagtttttttgacagaagaaagaaactcaaaacggTTTACCATCACTTGATGGtgagtacatttaatttttgggggtgtactatccctttaaggaggtTTTACTAACTAACATTTTGTCCATTGTGTGTGAAGTGCCTAGTTTCATATCAGAGACTATGCATATGGAAGAATGTTTCGTGTAGATAAAACTATCAGGGCTTATTATGAAGTTTACAGTTGTGTTGATTTTTAGAGAACTACAATAAAATGTGATTTCCTTATA

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0009240 isopentenyl diphosphate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004452 isopentenyl-diphosphate delta-isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-44 Predicted to enable isopentenyl-diphosphate delta-isomerase activity. Predicted to be involved in isopentenyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Orthologous to several human genes including IDI1 (isopentenyl-diphosphate delta isomerase 1).

Ensembl:

ensembl_id ENSDART00000143723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045995 lncRNA downstream 1163 3374684 ~ 3468210 (-) True XLOC_023240
TCONS_00045982 lncRNA downstream 640165 2826210 ~ 2829208 (-) True XLOC_023233
TCONS_00046840 lncRNA downstream 647589 2762720 ~ 2821784 (-) True XLOC_023232
TCONS_00046839 lncRNA downstream 1631554 1794330 ~ 1837819 (-) True XLOC_023225
TCONS_00045967 lncRNA downstream 1671921 1741357 ~ 1797452 (-) False XLOC_023225
TCONS_00047133 lncRNA upstream 4290 3481393 ~ 3487660 (-) True XLOC_023243
TCONS_00045998 lncRNA upstream 32274 3509377 ~ 3534690 (-) True XLOC_023244
TCONS_00046841 lncRNA upstream 324683 3801786 ~ 3814597 (-) True XLOC_023246
TCONS_00046001 lncRNA upstream 339595 3816698 ~ 3821217 (-) False XLOC_023247
TCONS_00046002 lncRNA upstream 339595 3816698 ~ 3840668 (-) False XLOC_023247
TCONS_00045994 mRNA downstream 42753 3348440 ~ 3426620 (-) False XLOC_023240
TCONS_00045996 mRNA downstream 49375 3413854 ~ 3419998 (-) True XLOC_023241
TCONS_00045993 mRNA downstream 61866 3347510 ~ 3407507 (-) False XLOC_023240
TCONS_00045992 mRNA downstream 126708 3257601 ~ 3342665 (-) True XLOC_023239
TCONS_00045991 mRNA downstream 164709 3257376 ~ 3304664 (-) False XLOC_023239
TCONS_00045999 mRNA upstream 60659 3537762 ~ 3783258 (-) False XLOC_023245
TCONS_00046000 mRNA upstream 62754 3539857 ~ 3783497 (-) True XLOC_023245
TCONS_00046007 mRNA upstream 664381 4141484 ~ 4148915 (-) False XLOC_023249
TCONS_00046008 mRNA upstream 664386 4141489 ~ 4148914 (-) True XLOC_023249
TCONS_00046010 mRNA upstream 970532 4447635 ~ 4450238 (-) True XLOC_023251
TCONS_00045986 other downstream 549852 2919405 ~ 2919521 (-) True XLOC_023236
TCONS_00045981 other downstream 780179 2689078 ~ 2689194 (-) True XLOC_023231
TCONS_00045948 other downstream 2475243 994016 ~ 994130 (-) True XLOC_023218
TCONS_00045944 other downstream 2941990 527269 ~ 527383 (-) True XLOC_023214
TCONS_00046009 other upstream 841076 4318179 ~ 4318293 (-) True XLOC_023250
TCONS_00046012 other upstream 1279059 4756162 ~ 4765684 (-) True XLOC_023253
TCONS_00046033 other upstream 2681002 6158105 ~ 6158878 (-) True XLOC_023274
TCONS_00046037 other upstream 2809496 6286599 ~ 6333673 (-) False XLOC_023276
TCONS_00046038 other upstream 2814490 6291593 ~ 6342897 (-) False XLOC_023276

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000070_02659015_02664679.mRNA True 1384 mRNA 0.46 5 CI01000070 2658854 ~ 2665065 (+)