XLOC_023311 (vps41)


Basic Information

Item Value
gene id XLOC_023311
gene name vps41
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 9895851 ~ 9960316 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046101
GGCCGTGATAATGAACAGCGCATGACTAGCCTGGATGGTTTATTGTGCTAAATAACCGATTTtggtgtaaataaaaaatattaaacttgtCGGTAGACTGTAAGTTGTTAGACTAAGACGAAATCTGCCTTAAAATCTCACGTCTGGAGCTTGTATCATGGCGGAAGTGGAGGAGCAGGGAAGAAAACTAAGTGAAGAGTCCACAGACGAGTCTGAGgaagAGGACACAGAGGAGGAGCCTAAACTGAAGTACGAGAGACTGACCAATGGTGTGACCGAGATCTTACAGAAGGATGCGGCCAGCTGCATGACAGTGCATGACAAGTTCCTGGCTCTCGGGACGCACTTTGGGAAGGTTTTCCTTTTGGATATTCAAGGAAATGTTACGCAGAAGTTTGAAATTAGTTCTGTGAAAATTAATCAGATCAGTTTGGATGAGAGTGGGGATCATGTTGGCATCTGCTCTGAGGATGGAAAGGTGCAAGTATTTGGCCTGTACACCAGGGAGGGCTTCCACGAAAACTTTGACTGTCCCATCAAGGTTGTGGCGCTGCACCCTCAGTTCAGCAAGTCCAACAATAAACAGTTTGTGACTGGAGGAAATAAGCTTTTGCTGTATGAGAGGAACTGGCTGAACCGCTGGAAGACTTCAGTTCTGCACGAAGGAGAAGGAAACATCACCAGTGTGAAATGGAGAGGAAATCTTATCGCCTGGGCAAACAATGTGGGTGTGAAAATCTATGACATAGGCAGTAAACAGCGCATCACTAATGTTTTGCGGGACAACACCAGTCTTAGGCCGGATATGTATCCCTGCAGTCTTTGCTGGAAAGACAACACCACGCTGATCATCGGCTGGGGCTGTTCTGTTAAGatctGTGCTGTTAAAGAGCGTGACCCAACAGAGATGAGGGATCTACCCAGTCGCTATGTTGAGATCGTGTCAGCATTTGAGACAGAGTTCTTCATCAGTGGACTGGCACCTTTGGCAGATCAGCTGGTCACTCTGTACTATGTCAAAGAGAATTCTGATCACATGGAAGAGGAGTTCAGAACACGGCCTCGTTTAGACATCATCCAGCCATTACCAGAGGGATGTGAAGAGATCTCATCAGACGCCCTCACTGTACGCAACTTCCAGGAGAACCAGTGCAGGGACTATAGGCTCGAACACTCTGAGGGAGAGTCTTTATTCTACATCATCAGTCCTAAAGACATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTTTGGAGAAGAAGAAATATGAGGAGGAAGCACTAATGGCAGCAGAGAtcagctttaaaaatattaaaaggcaTGATGTACAGAAAATTGGAATGGCGTACATCAATCATTTGGTGGAGAAAGGAGATTATGACACAGCTGCCAGAAAGTGTCAGAAAGTGCTAGGAAAGAATATGGATCTTTGGGAGAATGAAGTGTACAGGTTCAAAACAATTGGCCAGTTGAAAGCCATCAGTCAGTACTTACCGAGAGGAGACTTGCGCCTTCGACCTGCTATTTATGAGATGATCCTTCATGACTTCCTCAAGACTGACTATGAGGGTTTTGCCACACTCATTCGTGAGTGGCCTGGAGAGCTGTATAACAACATGGCTATAGTTCAGGCAGTGAATGAACACCTGAAGAAGGACCCCACCAACAGCATTCTCCTCACCACACTCGCAGAGCTATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGACTGAGACACAAAGATGTTTACCAGCTCATTCATAAACACAACCTGTTCTCCTCCATCAAGGACAAGATTGTCTTGCTCATGGATTTTGACAAAGAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCGATGGACAAAGTGGTGGAGGAATTAAAAGACAGGCCTGAGCTCTTACATGTGTATTTGCACAAGCTGTTTAAGCGAGACCACCATAAGGGACAGAAGTATCATGAGAGGCAGATCAGTTTATATGCTGAGTTTGACCGACCAAACCTGCTGCCCTTCCTCAGAGAGAGCATGCACTGCCCATTAGAGAAGGCTTTGGAAATCTGTCAGCAGAGGCACTTTGTAGAAGAGACAGTCTTCCTGCTCAGTCGTATGGGGAACTGCAGACGGGCTCTACAGATGATCATGGAGGAGCTGGCGAATGTGGACAAGGCCATTGAGTTTGCCAAAGAGCAGGATGACCGAGAACTCTGGGAGGATCTCATCTCTTACTCTATTGACAAACCACCTTTTATCACAGGCCTCTTGAATAACATTGGAACCCATGTGGACCCAATCCTGCTCATTCATCGCATTAAAGAAGGGATGGAGATTCCTAACCTCAGAGACTCACTGGTCAAAATCCTACATGACTACAATCTACAGATTTTACTGCGGGAAGGCTGTAAGAAGATCTTGGTGGCCGATTCTCTGTCTCTTCTCCAGCGGATGCACAGGACACAGAAGAAAGGAGTGCGGGTGGAtgAGGAAAACATCTGTGAGTCGTGTCACACTCCTATTCTACCATCAGACACGGCTCAAGCATTCGGTGTGGTGGTGTTTCACTGCAGACACATGTTCCACAAGGAGTGTCTGCCGTCCCCTGGATCTATCCCAGGGATACAGTATTGTAACATCTGCAGTGCGAAGCGCAGAGGACCAGGCAGCGGCATCCTGGAGATGAAGAAATAATCATTCTTGCTCACTAGAACAACAGTTAGTCAATTAACACTCACTCAGAGCCTGTACGAAATGCAATTATAAGATCTTCATATTTATTAATGCAAGCTCGTGATCTTCATGTTTGAATGTTTAACATAAGCGGCGCCAATAAAGCACTTCCATAATCCCCCTCAGGAGTCTGTTGCCGCAATATTACAGATCATTCCCTTATCCTCTACTCATTCCAAACCATTTTGAGTTTTTTGTTGTTGGATATAAATGGAGAAATACTGGAGAaagttgaaaaaataaacagccatcggcttccatggtatttttttcatgacattcttcagaatatatcattttgtgttaaacagaagaaagaacttcataaaagtttagaac
>TCONS_00046103
TTCCTGTTTTTATCATGTGACCCAGTGGCCGTGATAATGAACAGCGCATGACTAGCCTGGATGGTTTATTGTGCTAAATAACCGATTTtggtgtaaataaaaaatattaaacttgtCGGTAGACTGTAAGTTGTTAGACTAAGACGAAATCTGCCTTAAAATCTCACGTCTGGAGCTTGTATCATGGCGGAAGTGGAGGAGCAGGGAAGAAAACTAAGTGAAGAGTCCACAGACGAGTCTGAGgaagAGGACACAGAGGAGGAGCCTAAACTGAAGTACGAGAGACTGACCAATGGTGTGACCGAGATCTTACAGAAGGATGCGGCCAGCTGCATGACAGTGCATGACAAGTTCCTGGCTCTCGGGACGCACTTTGGGAAGGTTTTCCTTTTGGATATTCAAGGAAATGTTACGCAGAAGTTTGAAATTAGTTCTGTGAAAATTAATCAGATCAGTTTGGATGAGAGTGGGGATCATGTTGGCATCTGCTCTGAGGATGGAAAGGTGCAAGTATTTGGCCTGTACACCAGGGAGGGCTTCCACGAAAACTTTGACTGTCCCATCAAGGTTGTGGCGCTGCACCCTCAGTTCAGCAAGTCCAACAATAAACAGTTTGTGACTGGAGGAAATAAGCTTTTGCTGTATGAGAGGAACTGGCTGAACCGCTGGAAGACTTCAGTTCTGCACGAAGGAGAAGGAAACATCACCAGTGTGAAATGGAGAGGAAATCTTATCGCCTGGGCAAACAATGTGGGTGTGAAAATCTATGACATAGGCAGTAAACAGCGCATCACTAATGTTTTGCGGGACAACACCAGTCTTAGGCCGGATATGTATCCCTGCAGTCTTTGCTGGAAAGACAACACCACGCTGATCATCGGCTGGGGCTGTTCTGTTAAGatctGTGCTGTTAAAGAGCGTGACCCAACAGAGATGAGGGATCTACCCAGTCGCTATGTTGAGATCGTGTCAGCATTTGAGACAGAGTTCTTCATCAGTGGACTGGCACCTTTGGCAGATCAGCTGGTCACTCTGTACTATGTCAAAGAGAATTCTGATCACATGGAAGAGGAGTTCAGAACACGGCCTCGTTTAGACATCATCCAGCCATTACCAGAGGGATGTGAAGAGATCTCATCAGACGCCCTCACTGTACGCAACTTCCAGGAGAACCAGTGCAGGGACTATAGGCTCGAACACTCTGAGGGAGAGTCTTTATTCTACATCATCAGTCCTAAAGACATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTTTGGAGAAGAAGAAATATGAGGAAGCACTAATGGCAGCAGAGAtcagctttaaaaatattaaaaggcaTGATGTACAGAAAATTGGAATGGCGTACATCAATCATTTGGTGGAGAAAGGAGATTATGACACAGCTGCCAGAAAGTGTCAGAAAGTGCTAGGAAAGAATATGGATCTTTGGGAGAATGAAGTGTACAGGTTCAAAACAATTGGCCAGTTGAAAGCCATCAGTCAGTACTTACCGAGAGGAGACTTGCGCCTTCGACCTGCTATTTATGAGATGATCCTTCATGACTTCCTCAAGACTGACTATGAGGGTTTTGCCACACTCATTCGTGAGTGGCCTGGAGAGCTGTATAACAACATGGCTATAGTTCAGGCAGTGAATGAACACCTGAAGAAGGACCCCACCAACAGCATTCTCCTCACCACACTCGCAGAGCTATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGACTGAGACACAAAGATGTTTACCAGCTCATTCATAAACACAACCTGTTCTCCTCCATCAAGGACAAGATTGTCTTGCTCATGGATTTTGACAAAGAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCGATGGACAAAGTGGTGGAGGAATTAAAAGACAGGCCTGAGCTCTTACATGTGTATTTGCACAAGCTGTTTAAGCGAGACCACCATAAGGGACAGAAGTATCATGAGAGGCAGATCAGTTTATATGCTGAGTTTGACCGACCAAACCTGCTGCCCTTCCTCAGAGAGAGCATGCACTGCCCATTAGAGAAGGCTTTGGAAATCTGTCAGCAGAGGCACTTTGTAGAAGAGACAGTCTTCCTGCTCAGTCGTATGGGGAACTGCAGACGGGCTCTACAGATGATCATGGAGGAGCTGGCGAATGTGGACAAGGCCATTGAGTTTGCCAAAGAGCAGGATGACCGAGAACTCTGGGAGGATCTCATCTCTTACTCTATTGACAAACCACCTTTTATCACAGGCCTCTTGAATAACATTGGAACCCATGTGGACCCAATCCTGCTCATTCATCGCATTAAAGAAGGGATGGAGATTCCTAACCTCAGAGACTCACTGGTCAAAATCCTACATGACTACAATCTACAGATTTTACTGCGGGAAGGCTGTAAGAAGATCTTGGTGGCCGATTCTCTGTCTCTTCTCCAGCGGATGCACAGGACACAGAAGAAAGGAGTGCGGGTGGAtgACACGGCTCAAGCATTCGGTGTGGTGGTGTTTCACTGCAGACACATGTTCCACAAGGAGTGTCTGCCGTCCCCTGGATCTATCCCAGGGATACAGTATTGTAACATCTGCAGTGCGAAGCGCAGAGGACCAGGCAGCGGCATCCTGGAGATGAAGAAATAA
>TCONS_00046102
TTCCTGTTTTTATCATGTGACCCAGTGGCCGTGATAATGAACAGCGCATGACTAGCCTGGATGGTTTATTGTGCTAAATAACCGATTTtggtgtaaataaaaaatattaaacttgtCGGTAGACTGTAAGTTGTTAGACTAAGACGAAATCTGCCTTAAAATCTCACGTCTGGAGCTTGTATCATGGCGGAAGTGGAGGAGCAGGGAAGAAAACTAAGTGAAGAGTCCACAGACGAGTCTGAGgaagAGGACACAGAGGAGGAGCCTAAACTGAAGTACGAGAGACTGACCAATGGTGTGACCGAGATCTTACAGAAGGATGCGGCCAGCTGCATGACAGTGCATGACAAGTTCCTGGCTCTCGGGACGCACTTTGGGAAGGTTTTCCTTTTGGATATTCAAGGAAATGTTACGCAGAAGTTTGAAATTAGTTCTGTGAAAATTAATCAGATCAGTTTGGATGAGAGTGGGGATCATGTTGGCATCTGCTCTGAGGATGGAAAGGTGCAAGTATTTGGCCTGTACACCAGGGAGGGCTTCCACGAAAACTTTGACTGTCCCATCAAGGTTGTGGCGCTGCACCCTCAGTTCAGCAAGTCCAACAATAAACAGTTTGTGACTGGAGGAAATAAGCTTTTGCTGTATGAGAGGAACTGGCTGAACCGCTGGAAGACTTCAGTTCTGCACGAAGGAGAAGGAAACATCACCAGTGTGAAATGGAGAGGAAATCTTATCGCCTGGGCAAACAATGTGGGTGTGAAAATCTATGACATAGGCAGTAAACAGCGCATCACTAATGTTTTGCGGGACAACACCAGTCTTAGGCCGGATATGTATCCCTGCAGTCTTTGCTGGAAAGACAACACCACGCTGATCATCGGCTGGGGCTGTTCTGTTAAGatctGTGCTGTTAAAGAGCGTGACCCAACAGAGATGAGGGATCTACCCAGTCGCTATGTTGAGATCGTGTCAGCATTTGAGACAGAGTTCTTCATCAGTGGACTGGCACCTTTGGCAGATCAGCTGGTCACTCTGTACTATGTCAAAGAGAATTCTGATCACATGGAAGAGGAGTTCAGAACACGGCCTCGTTTAGACATCATCCAGCCATTACCAGAGGGATGTGAAGAGATCTCATCAGACGCCCTCACTGTACGCAACTTCCAGGAGAACCAGTGCAGGGACTATAGGCTCGAACACTCTGAGGGAGAGTCTTTATTCTACATCATCAGTCCTAAAGACATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTTTGGAGAAGAAGAAATATGAGGAAGCACTAATGGCAGCAGAGAtcagctttaaaaatattaaaaggcaTGATGTACAGAAAATTGGAATGGCGTACATCAATCATTTGGTGGAGAAAGGAGATTATGACACAGCTGCCAGAAAGTGTCAGAAAGTGCTAGGAAAGAATATGGATCTTTGGGAGAATGAAGTGTACAGGTTCAAAACAATTGGCCAGTTGAAAGCCATCAGTCAGTACTTACCGAGAGGAGACTTGCGCCTTCGACCTGCTATTTATGAGATGATCCTTCATGACTTCCTCAAGACTGACTATGAGGGTTTTGCCACACTCATTCGTGAGTGGCCTGGAGAGCTGTATAACAACATGGCTATAGTTCAGGCAGTGAATGAACACCTGAAGAAGGACCCCACCAACAGCATTCTCCTCACCACACTCGCAGAGCTATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGACTGAGACACAAAGATGTTTACCAGCTCATTCATAAACACAACCTGTTCTCCTCCATCAAGGACAAGATTGTCTTGCTCATGGATTTTGACAAAGAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCGATGGACAAAGTGGTGGAGGAATTAAAAGACAGGCCTGAGCTCTTACATGTGTATTTGCACAAGCTGTTTAAGCGAGACCACCATAAGGGACAGAAGTATCATGAGAGGCAGATCAGTTTATATGCTGAGTTTGACCGACCAAACCTGCTGCCCTTCCTCAGAGAGAGCATGCACTGCCCATTAGAGAAGGCTTTGGAAATCTGTCAGCAGAGGCACTTTGTAGAAGAGACAGTCTTCCTGCTCAGTCGTATGGGGAACTGCAGACGGGCTCTACAGATGATCATGGAGGAGCTGGCGAATGTGGACAAGGCCATTGAGTTTGCCAAAGAGCAGGATGACCGAGAACTCTGGGAGGATCTCATCTCTTACTCTATTGACAAACCACCTTTTATCACAGGCCTCTTGAATAACATTGGAACCCATGTGGACCCAATCCTGCTCATTCATCGCATTAAAGAAGGGATGGAGATTCCTAACCTCAGAGACTCACTGGTCAAAATCCTACATGACTACAATCTACAGATTTTACTGCGGGAAGGCTGTAAGAAGATCTTGGTGGCCGATTCTCTGTCTCTTCTCCAGCGGATGCACAGGACACAGAAGAAAGGAGTGCGGGTGGAtgAGGAAAACATCTGTGAGTCGTGTCACACTCCTATTCTACCATCAGACACGGCTCAAGCATTCGGTGTGGTGGTGTTTCACTGCAGACACATGTTCCACAAGGAGTGTCTGCCGTCCCCTGGATCTATCCCAGGGATACAGTATTGTAACATCTGCAGTGCGAAGCGCAGAGGACCAGGCAGCGGCATCCTGGAGATGAAGAAATAA
>TCONS_00046104
aggaagAGGACACAGAGGAGGAGCCTAAACTGAAGTACGAGAGACTGACCAATGGTGTGACCGAGATCTTACAGAAGGATGCGGCCAGCTGCATGACAGTGCATGACAAGTTCCTGGCTCTCGGGACGCACTTTGGGAAGGTTTTCCTTTTGGATATTCAAGGAAATGTTACGCAGAAGTTTGAAATTAGTTCTGTGAAAATTAATCAGATCAGTTTGGATGAGAGTGGGGATCATGTTGGCATCTGCTCTGAGGATGGAAAGGTGCAAGTATTTGGCCTGTACACCAGGGAGGGCTTCCACGAAAACTTTGACTGTCCCATCAAGGTTGTGGCGCTGCACCCTCAGTTCAGCAAGTCCAACAATAAACAGTTTGTGACTGGAGGAAATAAGCTTTTGCTGTATGAGAGGAACTGGCTGAACCGCTGGAAGACTTCAGTTCTGCACGAAGGAGAAGGAAACATCACCAGTGTGAAATGGAGAGGAAATCTTATCGCCTGGGCAAACAATGTGGGTGTGAAAATCTATGACATAGGCAGTAAACAGCGCATCACTAATGTTTTGCGGGACAACACCAGTCTTAGGCCGGATATGTATCCCTGCAGTCTTTGCTGGAAAGACAACACCACGCTGATCATCGGCTGGGGCTGTTCTGTTAAGatctGTGCTGTTAAAGAGCGTGACCCAACAGAGATGAGGGATCTACCCAGTCGCTATGTTGAGATCGTGTCAGCATTTGAGACAGAGTTCTTCATCAGTGGACTGGCACCTTTGGCAGATCAGCTGGTCACTCTGTACTATGTCAAAGAGAATTCTGATCACATGGAAGAGGAGTTCAGAACACGGCCTCGTTTAGACATCATCCAGCCATTACCAGAGGGATGTGAAGAGATCTCATCAGACGCCCTCACTGTACGCAACTTCCAGGAGAACCAGTGCAGGGACTATAGGCTCGAACACTCTGAGGGAGAGTCTTTATTCTACATCATCAGTCCTAAAGACATCGTAGTGGCTAAAGAAAGAGACCAGGATGACCACATTGACTGGCTTTTGGAGAAGAAGAAATATGAGGAGGAAGCACTAATGGCAGCAGAGAtcagctttaaaaatattaaaaggcaTGATGTACAGAAAATTGGAATGGCGTACATCAATCATTTGGTGGAGAAAGGAGATTATGACACAGCTGCCAGAAAGTGTCAGAAAGTGCTAGGAAAGAATATGGATCTTTGGGAGAATGAAGTGTACAGGTTCAAAACAATTGGCCAGTTGAAAGCCATCAGTCAGTACTTACCGAGAGGAGACTTGCGCCTTCGACCTGCTATTTATGAGATGATCCTTCATGACTTCCTCAAGACTGACTATGAGGGTTTTGCCACACTCATTCGTGAGTGGCCTGGAGAGCTGTATAACAACATGGCTATAGTTCAGGCAGTGAATGAACACCTGAAGAAGGACCCCACCAACAGCATTCTCCTCACCACACTCGCAGAGCTATACACATATGATCAACGTTATGATCGAGCTCTGGAAATCTACCTGAGACTGAGACACAAAGATGTTTACCAGCTCATTCATAAACACAACCTGTTCTCCTCCATCAAGGACAAGATTGTCTTGCTCATGGATTTTGACAAAGAGAAAGCTGTTGACATGCTGCTGGATAATGAAGATAAAATATCGATGGACAAAGTGGTGGAGGAATTAAAAGACAGGCCTGAGCTCTTACATGTGTATTTGCACAAGCTGTTTAAGCGAGACCACCATAAGGGACAGAAGTATCATGAGAGGCAGATCAGTTTATATGCTGAGTTTGACCGACCAAACCTGCTGCCCTTCCTCAGAGAGAGCATGCACTGCCCATTAGAGAAGGCTTTGGAAATCTGTCAGCAGAGGCACTTTGTAGAAGAGACAGTCTTCCTGCTCAGTCGTATGGGGAACTGCAGACGGGCTCTACAGATGATCATGGAGGAGCTGGCGAATGTGGACAAGGCCATTGAGTTTGCCAAAGAGCAGGATGACCGAGAACTCTGGGAGGATCTCATCTCTTACTCTATTGACAAACCACCTTTTATCACAGGCCTCTTGAATAACATTGGAACCCATGTGGACCCAATCCTGCTCATTCATCGCATTAAAGAAGGGATGGAGATTCCTAACCTCAGAGACTCACTGGTCAAAATCCTACATGACTACAATCTACAGGTCTGATCAATACTGGTTAAAACAGCATGATTTTTTGGCCGCATTTAATGTCAATGTCAATGGCAAGTACAGAAATATCAGATGAAGCCTCAGTCATTGTCTGTCACTGCATTGGAGTTAGTTTGACTCTTGTTTGTTTCAGACACGGCTCAAGCATTCGGTGTGGTGGTGTTTCACTGCAGACACATGTTCCACAAGGAGTGTCTGCCGTCCCCTGGA

Function

symbol description
vps41 Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0009267 cellular response to starvation biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0046907 intracellular transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0016236 macroautophagy biological_process
GO:0034058 endosomal vesicle fusion biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0005770 late endosome cellular_component
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0030897 HOPS complex cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04138 Autophagy - yeast
ko05132 Salmonella infection
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-6671 Predicted to enable metal ion binding activity. Predicted to be involved in several processes, including cellular response to starvation; endosomal vesicle fusion; and protein targeting to vacuole. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and lysosome. Predicted to be part of HOPS complex. Predicted to be active in late endosome. Orthologous to human VPS41 (VPS41 subunit of HOPS complex).

Ensembl:

ensembl_id ENSDARG00000063573

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046101 False 3103 mRNA 0.45 29 9895851 9960290
TCONS_00046103 False 2703 mRNA 0.46 28 9896229 9960316
TCONS_00046102 False 2748 mRNA 0.46 29 9896229 9960316
TCONS_00046104 True 2423 nonsense_mediated_decay 0.46 24 9898062 9949362

Neighbor

gene id symbol gene type direction distance location
XLOC_023310 NA coding downstream 21160 9870547 ~ 9874691 (-)
XLOC_023309 BX649325.1 coding downstream 183241 9712495 ~ 9712610 (-)
XLOC_023308 uba5 coding downstream 205921 9673227 ~ 9689930 (-)
XLOC_023307 NA coding downstream 283495 9507674 ~ 9612356 (-)
XLOC_023306 tgif1 coding downstream 595691 9287409 ~ 9300160 (-)
XLOC_023312 zgc:171977 coding upstream 15896 9976212 ~ 9991286 (-)
XLOC_023313 si:ch211-146l10.7 coding upstream 34761 9995077 ~ 9997948 (-)
XLOC_023314 zgc:171750 coding upstream 43110 10003426 ~ 10006158 (-)
XLOC_023315 zgc:171474 coding upstream 50314 10010630 ~ 10014624 (-)
XLOC_023316 zgc:173856 coding upstream 58337 10018653 ~ 10021341 (-)
XLOC_023665 dre-mir-735 misc upstream 28217645 38177961 ~ 38178027 (-)
XLOC_023304 NA non-coding downstream 609209 9252734 ~ 9286642 (-)
XLOC_023305 NA non-coding downstream 614834 9275095 ~ 9281017 (-)
XLOC_023317 CR391965.1 non-coding upstream 295598 10255914 ~ 10256030 (-)
XLOC_023318 NA non-coding upstream 309540 10269856 ~ 10275658 (-)
XLOC_023320 NA non-coding upstream 537053 10497369 ~ 10499902 (-)
XLOC_023323 AL840641.3 non-coding upstream 944856 10905172 ~ 10905286 (-)
XLOC_023324 dre-mir-7147 non-coding upstream 987748 10948064 ~ 10948145 (-)

Expression


Co-expression Network