XLOC_023963 (ciapin1)


Basic Information

Item Value
gene id XLOC_023963
gene name ciapin1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 14398650 ~ 14406731 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047582
TTTCACTGCGACGCTCGCATGTACAACCGCCTGCGACATTACACCTGCGACACAGTCCGTCCTGAGTCTCCTGACCGGGTTTGGAAAAACATTCAAAGCAAGCAGGTAATGGCTGATCTGGGGCTTCAGAAAGGAAAGCGGGTGCTGCTCATATGGACTCAGCCTTCATCTTCTTCTGCACTGAAGCAGTTTGCTGAAAGCATCGCTGCTGTTGTTGGAGACCAGAGTCTGGTGTCTTTGGAGAACTCAGAGCGACTACTGCTGTCTTCACACAATGCCTCCAGCTATGACTGTGTTCTATCAGGCCTGCTGACCGACTCCTCATTAATCCACAGTTCAGAGATGTTGGTTGAGATGGCCAGAGTCATGAAGCCTGGGGGAACACTGGTGCTAGAGGAGCCAGTCACAGgttCTGAGGACACTGGTGTGAGAACCGCTGAGAAACTGATGTCTGCTATTAAACTGGCTGGATTAGTGTCGGTCACAGAGGTGAAAACAGAGCCGCTGAGTCCAAAAGCAGCAGCCGCTCTCACAGAACGAACAGGATTCAGTGGAAACACACTGTCAAGAGTGCGCATGACGGCATCTAAACCTGATTTTGAGGTCGGATCCTCAACACAGCTAAAACTTTCCTTTGGCAAGAAAAAGACTACGACAGTAAAACCAGCTCTTGATCCCGGCACTGCACAGAAGTGGACTCTATCAGCTAATGACATGGATGACGATGACGTGGATTTGGTAGATTCAGATGCTCTTTTGGATGCAGATGACCTGAAAAAGCCTGACCCGTCCTCCCTCAAAGCCTCCTGTGGAGACGActccaagaagaagaaaaaagcctGCAAAAACTGcactTGTGGTCTTGCTGAAGAACTAGAACAGGAGAGTAAAGCTGCGCAGAAAGCCAGCCAGCCCAAATCAGCCTGTGGGAATTGTTATCTGGGTGATGCCTTCCGATGTGGCAGCTGTCCATATCTCGGCATGCCAGCCTTCAAACCTGGAGAGAAGGTGCTCCTGGCCAACACCGATATAGCTGATAAATAGGTATTCAGTTTTGAGACATTATTACATTCCACGATCGACGCTGTGGCTCAGATTGTAAACAAACATTCACATTGATGTCAAATAAAACACTGATACCCAAACAACAAACACACGCAGAAACACTGGCTATATGCTTCAGTTGTAAATGTCTCTTACCATATAATTGTTATTCTTGTAAGTATGCCAAATATATGTAACTGGATGCTcagattataaataaattcagattttgCCACACTGGCCAA
>TCONS_00047583
ATGGCTGATCTGGGGCTTCAGAAAGGAAAGCGGGTGCTGCTCATATGGACTCAGCCTTCATCTTCTTCTGCACTGAAGCAGTTTGCTGAAAGCATCGCTGCTGTTGTTGGAGACCAGAGTCTGGTGTCTTTGGAGAACTCAGAGCGACTACTGCTGTCTTCACACAATGCCTCCAGCTATGACTGTGTTCTATCAGGCCTGCTGACCGACTCCTCATTAATCCACAGTTCAGAGATGTTGGTTGAGATGGCCAGAGTCATGAAGCCTGGGGGAACACTGGTGCTAGAGGAGCCAGTCACAGgttCTGAGGACACTGGTGTGAGAACCGCTGAGAAACTGATGTCTGCTATTAAACTGGCTGGATTAGTGTCGGTCACAGAGGTGAAAACAGAGCCGCTGAGTCCAAAAGCAGCAGCCGCTCTCACAGAACGAACAGGATTCAGTGGAAACACACTGTCAAGAGTGCGCATGACGGCATCTAAACCTGATTTTGAGGTCGGATCCTCAACACAGCTAAAACTTTCCTTTGGCAAGAAAAAGACTACGACAGTAAAACCAGCTCTTGATCCCGGCACTGCACAGAAGTGGACTCTATCAGCTAATGACATGGATGACGATGACGTGGATTTGGTAGATTCAGATGCTCTTTTGGATGCAGATGACCTGAAAAAGCCTGACCCGTCCTCCCTCAAAGCCTCCTGTGGAGACGActccaagaagaagaaaaaagcctGCAAAAACTGcactTGTGGTCTTGCTGAAGAACTAGAACAGGAGAGTAAAGCTGCGCAGAAAGCCAGCCAGCCCAAATCAGCCTGTGGGAATTGTTATCTGGGTGATGCCTTCCGATGTGGCAGCTGTCCATATCTCGGCATGCCAGCCTTCAAACCTGGAGAGAAGGTGCTCCTGGCCAACACCGATATAGCTGATAAATAGGT

Function

symbol description
ciapin1 Predicted to enable 2 iron, 2 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrial intermembrane space and nucleus. Predicted to be active in cytoplasm. Orthologous to human CIAPIN1 (cytokine induced apoptosis inhibitor 1).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006915 apoptotic process biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-57 Predicted to enable 2 iron, 2 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrial intermembrane space and nucleus. Predicted to be active in cytoplasm. Orthologous to human CIAPIN1 (cytokine induced apoptosis inhibitor 1).

Ensembl:

ensembl_id ENSDARG00000045733

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047582 False 1289 mRNA 0.47 9 14398650 14406731
TCONS_00047583 True 938 mRNA 0.50 8 14400704 14406488

Neighbor

gene id symbol gene type direction distance location
XLOC_023962 shank2b coding upstream 32573 14165447 ~ 14366077 (+)
XLOC_023961 CR382374.1 coding upstream 263946 14134590 ~ 14134704 (+)
XLOC_023959 actc1c coding upstream 273152 14087045 ~ 14125498 (+)
XLOC_023960 guca1g coding upstream 302339 14092871 ~ 14096311 (+)
XLOC_023958 chst1 coding upstream 377539 14017609 ~ 14021111 (+)
XLOC_023964 AL929309.1 coding downstream 24808 14431539 ~ 14433008 (+)
XLOC_023965 dbx1b coding downstream 100836 14507567 ~ 14510482 (+)
XLOC_023966 CR388067.1 coding downstream 277502 14684233 ~ 14684347 (+)
XLOC_023967 mpped2 coding downstream 288145 14694876 ~ 14739282 (+)
XLOC_023968 dnajc24 coding downstream 463312 14870043 ~ 14899109 (+)
XLOC_023973 CR762411.1 misc downstream 811093 15217824 ~ 15218109 (+)
XLOC_023953 NA non-coding upstream 772927 13619831 ~ 13625723 (+)
XLOC_023952 NA non-coding upstream 835836 13558992 ~ 13562814 (+)
XLOC_023948 AL772241.1 non-coding upstream 1116984 13281610 ~ 13281666 (+)
XLOC_023946 NA non-coding upstream 1128114 13269659 ~ 13270536 (+)
XLOC_023969 NA non-coding downstream 525251 14931982 ~ 15034584 (+)
XLOC_023970 NA non-coding downstream 693807 15100538 ~ 15126304 (+)
XLOC_023971 AL929172.1 non-coding downstream 712866 15119597 ~ 15119730 (+)

Expression


Co-expression Network