RNA id: TCONS_00047582


Basic Information

Item Value
RNA id TCONS_00047582
length 1289
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_023963
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 14398650 ~ 14406731 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCACTGCGACGCTCGCATGTACAACCGCCTGCGACATTACACCTGCGACACAGTCCGTCCTGAGTCTCCTGACCGGGTTTGGAAAAACATTCAAAGCAAGCAGGTAATGGCTGATCTGGGGCTTCAGAAAGGAAAGCGGGTGCTGCTCATATGGACTCAGCCTTCATCTTCTTCTGCACTGAAGCAGTTTGCTGAAAGCATCGCTGCTGTTGTTGGAGACCAGAGTCTGGTGTCTTTGGAGAACTCAGAGCGACTACTGCTGTCTTCACACAATGCCTCCAGCTATGACTGTGTTCTATCAGGCCTGCTGACCGACTCCTCATTAATCCACAGTTCAGAGATGTTGGTTGAGATGGCCAGAGTCATGAAGCCTGGGGGAACACTGGTGCTAGAGGAGCCAGTCACAGgttCTGAGGACACTGGTGTGAGAACCGCTGAGAAACTGATGTCTGCTATTAAACTGGCTGGATTAGTGTCGGTCACAGAGGTGAAAACAGAGCCGCTGAGTCCAAAAGCAGCAGCCGCTCTCACAGAACGAACAGGATTCAGTGGAAACACACTGTCAAGAGTGCGCATGACGGCATCTAAACCTGATTTTGAGGTCGGATCCTCAACACAGCTAAAACTTTCCTTTGGCAAGAAAAAGACTACGACAGTAAAACCAGCTCTTGATCCCGGCACTGCACAGAAGTGGACTCTATCAGCTAATGACATGGATGACGATGACGTGGATTTGGTAGATTCAGATGCTCTTTTGGATGCAGATGACCTGAAAAAGCCTGACCCGTCCTCCCTCAAAGCCTCCTGTGGAGACGActccaagaagaagaaaaaagcctGCAAAAACTGcactTGTGGTCTTGCTGAAGAACTAGAACAGGAGAGTAAAGCTGCGCAGAAAGCCAGCCAGCCCAAATCAGCCTGTGGGAATTGTTATCTGGGTGATGCCTTCCGATGTGGCAGCTGTCCATATCTCGGCATGCCAGCCTTCAAACCTGGAGAGAAGGTGCTCCTGGCCAACACCGATATAGCTGATAAATAGGTATTCAGTTTTGAGACATTATTACATTCCACGATCGACGCTGTGGCTCAGATTGTAAACAAACATTCACATTGATGTCAAATAAAACACTGATACCCAAACAACAAACACACGCAGAAACACTGGCTATATGCTTCAGTTGTAAATGTCTCTTACCATATAATTGTTATTCTTGTAAGTATGCCAAATATATGTAACTGGATGCTcagattataaataaattcagattttgCCACACTGGCCAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006915 apoptotic process biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-57 Predicted to enable 2 iron, 2 sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within apoptotic process. Predicted to be located in mitochondrial intermembrane space and nucleus. Predicted to be active in cytoplasm. Orthologous to human CIAPIN1 (cytokine induced apoptosis inhibitor 1).

Ensembl:

ensembl_id ENSDART00000130548

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047567 lncRNA upstream 772927 13619831 ~ 13625723 (+) False XLOC_023953
TCONS_00049205 lncRNA upstream 772927 13620552 ~ 13625723 (+) False XLOC_023953
TCONS_00049206 lncRNA upstream 772927 13621560 ~ 13625723 (+) False XLOC_023953
TCONS_00049204 lncRNA upstream 835836 13558992 ~ 13562814 (+) True XLOC_023952
TCONS_00049029 lncRNA upstream 1128114 13269659 ~ 13270536 (+) True XLOC_023946
TCONS_00047584 lncRNA downstream 24808 14431539 ~ 14433008 (+) True XLOC_023964
TCONS_00049207 lncRNA downstream 525251 14931982 ~ 14951172 (+) False XLOC_023969
TCONS_00049030 lncRNA downstream 527586 14934317 ~ 14934716 (+) False XLOC_023969
TCONS_00049031 lncRNA downstream 527586 14934317 ~ 14951262 (+) False XLOC_023969
TCONS_00049208 lncRNA downstream 527641 14934372 ~ 14951172 (+) False XLOC_023969
TCONS_00047581 mRNA upstream 32573 14165447 ~ 14366077 (+) True XLOC_023962
TCONS_00047579 mRNA upstream 273152 14109626 ~ 14125498 (+) True XLOC_023959
TCONS_00047577 mRNA upstream 283654 14087045 ~ 14114996 (+) False XLOC_023959
TCONS_00047578 mRNA upstream 302339 14092871 ~ 14096311 (+) True XLOC_023960
TCONS_00047576 mRNA upstream 377539 14017609 ~ 14021111 (+) False XLOC_023958
TCONS_00047585 mRNA downstream 100836 14507567 ~ 14510482 (+) True XLOC_023965
TCONS_00047587 mRNA downstream 288145 14694876 ~ 14739058 (+) False XLOC_023967
TCONS_00047588 mRNA downstream 288183 14694914 ~ 14738425 (+) False XLOC_023967
TCONS_00047589 mRNA downstream 290516 14697247 ~ 14739282 (+) True XLOC_023967
TCONS_00047590 mRNA downstream 463312 14870043 ~ 14899109 (+) False XLOC_023968
TCONS_00047580 other upstream 263946 14134590 ~ 14134704 (+) True XLOC_023961
TCONS_00047574 other upstream 598797 13799157 ~ 13799853 (+) True XLOC_023957
TCONS_00047563 other upstream 1116984 13281610 ~ 13281666 (+) True XLOC_023948
TCONS_00047558 other upstream 1201908 13196626 ~ 13196742 (+) True XLOC_023943
TCONS_00047556 other upstream 1204701 13191425 ~ 13193949 (+) False XLOC_023942
TCONS_00047586 other downstream 277502 14684233 ~ 14684347 (+) True XLOC_023966
TCONS_00047592 other downstream 534057 14940788 ~ 14940902 (+) True XLOC_023969
TCONS_00047593 other downstream 712866 15119597 ~ 15119730 (+) True XLOC_023971
TCONS_00047594 other downstream 727871 15134602 ~ 15134718 (+) True XLOC_023972
TCONS_00047595 other downstream 811093 15217824 ~ 15218109 (+) True XLOC_023973

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000115_01105216_01105694.mRNA True 528 mRNA 0.42 3 CI01000115 1105216 ~ 1105910 (+)