RNA id: TCONS_00047590


Basic Information

Item Value
RNA id TCONS_00047590
length 1837
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_023968
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 14870043 ~ 14899109 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACTGAAAGCAGTGCAGCATGGACTGGCGAAGCAAACGCTCATGACAGCTCGTTAAAAAGTGGAGAAATCGTTTAATGTTCGGATTATGGCAGATTATAACGCTCCACAAAAAGACTGGTACTTAATACTTGGAGCCTGTCCAACAGATGACTTACAAGTGCTGAAACAGAAGTATCAGAAACTTGTCCTCATGTTTCACCCAGACAAGCAGAGGCCAGACGTTTCAGAAGAGGAAGCGGAGCAGCACCTGCAGCGATTCATTGACATCGACCAAGCTTGGAAGATCTTAAGTAATGAGGAGAGCAGGAACGAGTACAATTTGCAGTTACGGGCATGTGAGCTCAAACAGAGCTGGCCAGTGGATGCTCATATAACACTTGATGACATGAACTGGGATTATGaaacggaATGTTACTCGTACACCTGCCGATGTGGAGGAGAATTCATCTTAGAAAAAGACGAAACCCAAGAAGTGGAAACCGTTGTGTGCTGTGACTCCTGTTCGCTCAGCATTGAAGTAAAGAAGGGTACCTGACACTTTGGATGCTTTCGATTAGTTTCTTAATGGACTGAGATTTAACTCTTCTAAAAATGGGGCAAATTCAATAGACTCATGATTGATTTGAACAAAGCCTCATATCTGAGTTTGTCACCTTtcagatattatttattttgtttttattgtccaCCGAAATAGTTTGCATGATAGCAGGAACTGTCTATTTTCATCGGGAGGTTTCAATTTTCAcagattaaatattttaacatcaacatttatttcctagtattaatatttaagtattttgtaCAGATCAAAACCATTTCTTGTAgaagaaaacagcatatttcatttcgTTCACATGTACCTTACAGCAAGTGCATCACCAAATAACCAGAATTGGGTCACGCTAGACTCTCACTGTCTCAGAAAGCCCTTTGGTTGTTTCCTCTGAGCTAGACGTGCTCTTTTACGGACCAGACGTTtatgaaaagaagaaaaaaaaaacatgctgttcGTTCTCCAGCCCCCTCCTTTCACCCCCCGCCTCCTTGTGTTTGTGAGGACCAGGCGGCTCAGTAACCTCTTAGCTCTTGTTAACTTTGTTTGCatgtaaataaatgcagttttttccCTCCTCCAACAATGAAGTCACAAACTGCCTCCACACATCACTGGTCGAAAAAGGCCCTCCAGTTAATGATGAGCTTTTCTTTGCCTTATTGTTCTCCAGTCCACTCAATTTTGAGGGGAACCGCAAGGTTGCAGCATTGGAATAGGGTCATGGCTTTATTAAACTTCAAACAGTCATTAGGCTGTTTGCTAAAATCTGTCGTCCCACAGTAGAAACAGCTTGATCGGGGCAAAACCACGCTTTTCATCAATGTCCTGAGGCCTGAACCGAGGCTAGACCTGCCAGTGGACCGGCAGTGGACCGAACTGTAATCGACTGTGACATCAATTACGGATAATCTCATCACTTTTGGAGAGTGGGCTTGTCAAAGCTCTAATTAAGTCCTCGGATTCCCCTATATGTGCAGACAGGATCAACAACACATTATAGTGCTATGATAGACATCATCATCATTCTATTTTTGAGGAACTCTAACTTTTAACCTAGCGTGCACTTGTGGGTCTGGTCAGGCATTTGGGCTGCCGTGTTTGCCACTTTTGGTCACTGTGTGTTAAACCATTGCTGTAGGAATTATTACACTTCTTTGGTTTATCCCATAGTAGTTATGTCCTTTATTGAACTATTTAAGTTCCTATTGTGATTTCTGTCTTatttctaactgatttatttcagtatttcatATAAACATGGATCACACAGAAA

Function

GO:

id name namespace
GO:0032781 positive regulation of ATPase activity biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008198 ferrous iron binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-040426-1153 Predicted to enable ATPase activator activity and ferrous iron binding activity. Predicted to be involved in positive regulation of ATPase activity. Orthologous to human DNAJC24 (DnaJ heat shock protein family (Hsp40) member C24).

Ensembl:

ensembl_id ENSDART00000035714

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047584 lncRNA upstream 437035 14431539 ~ 14433008 (+) True XLOC_023964
TCONS_00047567 lncRNA upstream 1244320 13619831 ~ 13625723 (+) False XLOC_023953
TCONS_00049205 lncRNA upstream 1244320 13620552 ~ 13625723 (+) False XLOC_023953
TCONS_00049206 lncRNA upstream 1244320 13621560 ~ 13625723 (+) False XLOC_023953
TCONS_00049204 lncRNA upstream 1307229 13558992 ~ 13562814 (+) True XLOC_023952
TCONS_00049207 lncRNA downstream 32873 14931982 ~ 14951172 (+) False XLOC_023969
TCONS_00049030 lncRNA downstream 35208 14934317 ~ 14934716 (+) False XLOC_023969
TCONS_00049031 lncRNA downstream 35208 14934317 ~ 14951262 (+) False XLOC_023969
TCONS_00049208 lncRNA downstream 35263 14934372 ~ 14951172 (+) False XLOC_023969
TCONS_00049209 lncRNA downstream 35263 14934372 ~ 15034584 (+) False XLOC_023969
TCONS_00047589 mRNA upstream 130761 14697247 ~ 14739282 (+) True XLOC_023967
TCONS_00047587 mRNA upstream 130985 14694876 ~ 14739058 (+) False XLOC_023967
TCONS_00047588 mRNA upstream 131618 14694914 ~ 14738425 (+) False XLOC_023967
TCONS_00047585 mRNA upstream 359561 14507567 ~ 14510482 (+) True XLOC_023965
TCONS_00047582 mRNA upstream 463312 14398650 ~ 14406731 (+) False XLOC_023963
TCONS_00047596 mRNA downstream 374261 15273370 ~ 15285590 (+) True XLOC_023974
TCONS_00047597 mRNA downstream 387927 15287036 ~ 15351444 (+) True XLOC_023975
TCONS_00047598 mRNA downstream 454986 15354095 ~ 15482419 (+) True XLOC_023976
TCONS_00047601 mRNA downstream 748641 15647750 ~ 15800834 (+) False XLOC_023981
TCONS_00047602 mRNA downstream 748884 15647993 ~ 15800831 (+) False XLOC_023981
TCONS_00047586 other upstream 185696 14684233 ~ 14684347 (+) True XLOC_023966
TCONS_00047580 other upstream 735339 14134590 ~ 14134704 (+) True XLOC_023961
TCONS_00047574 other upstream 1070190 13799157 ~ 13799853 (+) True XLOC_023957
TCONS_00047563 other upstream 1588377 13281610 ~ 13281666 (+) True XLOC_023948
TCONS_00047558 other upstream 1673301 13196626 ~ 13196742 (+) True XLOC_023943
TCONS_00047592 other downstream 41679 14940788 ~ 14940902 (+) True XLOC_023969
TCONS_00047593 other downstream 220488 15119597 ~ 15119730 (+) True XLOC_023971
TCONS_00047594 other downstream 235493 15134602 ~ 15134718 (+) True XLOC_023972
TCONS_00047595 other downstream 318715 15217824 ~ 15218109 (+) True XLOC_023973
TCONS_00047599 other downstream 588385 15487494 ~ 15489644 (+) True XLOC_023978

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU143342 True 280 lncRNA 0.48 1 NC_047601.1 25382958 ~ 25383237 (-)