RNA id: TCONS_00049209


Basic Information

Item Value
RNA id TCONS_00049209
length 769
lncRNA type antisense_over
GC content 0.53
exon number 6
gene id XLOC_023969
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 14931982 ~ 15034584 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCATTTGCTTCAAAACGTGTTGACGATTGTTTGGCGAATGTGGAAAAGCGTCAGGCCTCACCTTCATTATTGGCCAGCATCAGATGAATGTGTGTACGAATGTGCGTCCCAGGCCTCCAGTGTGACAGACGGGGGGTGTGCTGTGACGGAAAGACCCTCGCTAACACTTGCCTGACAGACAATAAAACACAGAAAGCTCGTCCTGCAGATAATTTGACACCCCCTGCCCCCAATTCTGGACAAAAAAGGGTCCTGTGAGAGAggagtgtacagccaagcacatggcAGGACAGGCGCTGGTGTCCTGGGCTGGGGCCGTATGGAAGGTCAGGGGGGTTGGCGAGGAGCGCCAGCCAGGACTCTGAAGGAAACAGTGGGAGAATGAGGCGGCTTGAGCCCGCTGGTCACCAGCCAACAGCCCAGCCTCGAGTGTACGCTTTCCTCCGCGAAACACTCCACAGTGGTGGAGGGGGAAGCTTTATCCTGTGCTGCTGGTGTGAGAATCAGCCTGGCATTTGATTCAGTGCAGAAGCAGGAGCAGCAGCACCTGGATTTCCTCTGCAAGCACTTCACCAAAACAAGGCCAATCCCAGTCTCTCGTACCTGACCGTTTTCTGCTGTAAGGATTCATCTCTATATTTCCCTCCCTGCTGGGTCTCCCGAGGGGGCAAAATAACAGACTTTACCCTGCAATCATTCCTTACACATACTGTTTTCGTTTAAGCTGAAGCCTCATTTGGGTCTCATCTGAGTCCTCGCCATTGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047584 lncRNA upstream 501364 14431539 ~ 14433008 (+) True XLOC_023964
TCONS_00047567 lncRNA upstream 1308649 13619831 ~ 13625723 (+) False XLOC_023953
TCONS_00049205 lncRNA upstream 1308649 13620552 ~ 13625723 (+) False XLOC_023953
TCONS_00049206 lncRNA upstream 1308649 13621560 ~ 13625723 (+) False XLOC_023953
TCONS_00049204 lncRNA upstream 1371558 13558992 ~ 13562814 (+) True XLOC_023952
TCONS_00049032 lncRNA downstream 65954 15100538 ~ 15126304 (+) True XLOC_023970
TCONS_00049033 lncRNA downstream 449689 15484273 ~ 15486780 (+) True XLOC_023977
TCONS_00049034 lncRNA downstream 506182 15540766 ~ 15609995 (+) True XLOC_023980
TCONS_00049210 lncRNA downstream 1032293 16066877 ~ 16075263 (+) False XLOC_023985
TCONS_00049211 lncRNA downstream 1032293 16066877 ~ 16075816 (+) False XLOC_023985
TCONS_00047590 mRNA upstream 35263 14870043 ~ 14899109 (+) False XLOC_023968
TCONS_00047591 mRNA upstream 35958 14870077 ~ 14898414 (+) True XLOC_023968
TCONS_00047589 mRNA upstream 195090 14697247 ~ 14739282 (+) True XLOC_023967
TCONS_00047587 mRNA upstream 195314 14694876 ~ 14739058 (+) False XLOC_023967
TCONS_00047588 mRNA upstream 195947 14694914 ~ 14738425 (+) False XLOC_023967
TCONS_00047596 mRNA downstream 238786 15273370 ~ 15285590 (+) True XLOC_023974
TCONS_00047597 mRNA downstream 252452 15287036 ~ 15351444 (+) True XLOC_023975
TCONS_00047598 mRNA downstream 319511 15354095 ~ 15482419 (+) True XLOC_023976
TCONS_00047601 mRNA downstream 613166 15647750 ~ 15800834 (+) False XLOC_023981
TCONS_00047602 mRNA downstream 613409 15647993 ~ 15800831 (+) False XLOC_023981
TCONS_00047586 other upstream 250025 14684233 ~ 14684347 (+) True XLOC_023966
TCONS_00047580 other upstream 799668 14134590 ~ 14134704 (+) True XLOC_023961
TCONS_00047574 other upstream 1134519 13799157 ~ 13799853 (+) True XLOC_023957
TCONS_00047563 other upstream 1652706 13281610 ~ 13281666 (+) True XLOC_023948
TCONS_00047558 other upstream 1737630 13196626 ~ 13196742 (+) True XLOC_023943
TCONS_00047593 other downstream 85013 15119597 ~ 15119730 (+) True XLOC_023971
TCONS_00047594 other downstream 100018 15134602 ~ 15134718 (+) True XLOC_023972
TCONS_00047595 other downstream 183240 15217824 ~ 15218109 (+) True XLOC_023973
TCONS_00047599 other downstream 452910 15487494 ~ 15489644 (+) True XLOC_023978
TCONS_00047600 other downstream 455628 15490212 ~ 15490667 (+) True XLOC_023979

Expression Profile

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